1 /* PSPP - a program for statistical analysis.
2 Copyright (C) 2007, 2009 Free Software Foundation, Inc.
4 This program is free software: you can redistribute it and/or modify
5 it under the terms of the GNU General Public License as published by
6 the Free Software Foundation, either version 3 of the License, or
7 (at your option) any later version.
9 This program is distributed in the hope that it will be useful,
10 but WITHOUT ANY WARRANTY; without even the implied warranty of
11 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12 GNU General Public License for more details.
14 You should have received a copy of the GNU General Public License
15 along with this program. If not, see <http://www.gnu.org/licenses/>. */
19 #include <data/datasheet.h>
24 #include <data/casereader-provider.h>
25 #include <data/casereader.h>
26 #include <data/casewriter.h>
27 #include <data/lazy-casereader.h>
28 #include <data/settings.h>
29 #include <libpspp/array.h>
30 #include <libpspp/assertion.h>
31 #include <libpspp/misc.h>
32 #include <libpspp/range-map.h>
33 #include <libpspp/range-set.h>
34 #include <libpspp/sparse-xarray.h>
35 #include <libpspp/taint.h>
36 #include <libpspp/tower.h>
44 static struct axis *axis_create (void);
45 static struct axis *axis_clone (const struct axis *);
46 static void axis_destroy (struct axis *);
48 static void axis_hash (const struct axis *, struct md4_ctx *);
50 static bool axis_allocate (struct axis *, unsigned long int request,
51 unsigned long int *start,
52 unsigned long int *width);
53 static void axis_make_available (struct axis *,
54 unsigned long int start,
55 unsigned long int width);
56 static unsigned long int axis_extend (struct axis *, unsigned long int width);
58 static unsigned long int axis_map (const struct axis *, unsigned long log_pos);
60 static unsigned long axis_get_size (const struct axis *);
61 static void axis_insert (struct axis *,
62 unsigned long int log_start,
63 unsigned long int phy_start,
64 unsigned long int cnt);
65 static void axis_remove (struct axis *,
66 unsigned long int start, unsigned long int cnt);
67 static void axis_move (struct axis *,
68 unsigned long int old_start,
69 unsigned long int new_start,
70 unsigned long int cnt);
72 static struct source *source_create_empty (size_t n_bytes);
73 static struct source *source_create_casereader (struct casereader *);
74 static struct source *source_clone (const struct source *);
75 static void source_destroy (struct source *);
77 static casenumber source_get_backing_n_rows (const struct source *);
79 static int source_allocate_column (struct source *, int width);
80 static void source_release_column (struct source *, int ofs, int width);
81 static bool source_in_use (const struct source *);
83 static bool source_read (const struct column *, casenumber row, union value *);
84 static bool source_write (const struct column *, casenumber row,
86 static bool source_write_column (struct column *, const union value *);
87 static bool source_has_backing (const struct source *);
89 static int get_source_index (const struct datasheet *ds, const struct source *source);
91 /* A datasheet is internally composed from a set of data files,
92 called "sources". The sources that make up a datasheet must
93 have the same number of rows (cases), but their numbers of
94 columns (variables) may vary.
96 A datasheet's external view is produced by mapping (permuting
97 and selecting) its internal data. Thus, we can rearrange or
98 delete rows or columns simply by modifying the mapping. We
99 add rows by adding rows to each source and to the row mapping.
100 We add columns by adding a new source, then adding that source
101 to the column mapping.
103 Each source in a datasheet can be a casereader or a
104 sparse_xarray. Casereaders are read-only, so when sources
105 made from casereaders need to be modified, it is done
106 "virtually" through being overlaid by a sparse_xarray. */
109 struct range_set *avail; /* Free bytes are set to 1s. */
110 struct sparse_xarray *data; /* Data at top level, atop the backing. */
111 struct casereader *backing; /* Backing casereader (or null). */
112 casenumber backing_rows; /* Number of rows in backing (if backed). */
113 size_t n_used; /* Number of column in use (if backed). */
116 /* A logical column. */
119 struct source *source; /* Source of the underlying physical column. */
120 int value_ofs; /* If 'source' has a backing casereader,
121 column's value offset in its cases. */
122 int byte_ofs; /* Byte offset in source's sparse_xarray. */
123 int width; /* 0=numeric, otherwise string width. */
130 struct source **sources; /* Sources, in no particular order. */
131 size_t n_sources; /* Number of sources. */
134 struct caseproto *proto; /* Prototype for rows (initialized lazily). */
135 struct column *columns; /* Logical to physical column mapping. */
136 size_t n_columns; /* Number of logical columns. */
137 unsigned column_min_alloc; /* Min. # of columns to put in a new source. */
140 struct axis *rows; /* Logical to physical row mapping. */
143 struct taint *taint; /* Indicates corrupted data. */
146 /* Is this operation a read or a write? */
153 static void allocate_column (struct datasheet *, int width, struct column *);
154 static void release_source (struct datasheet *, struct source *);
155 static bool rw_case (struct datasheet *ds, enum rw_op op,
156 casenumber lrow, size_t start_column, size_t n_columns,
159 /* Returns the number of bytes needed to store a value with the
160 given WIDTH on disk. */
162 width_to_n_bytes (int width)
164 return width == 0 ? sizeof (double) : width;
167 /* Returns the address of the data in VALUE (for reading or
168 writing to/from disk). VALUE must have the given WIDTH. */
170 value_to_data (const union value *value_, int width)
172 union value *value = (union value *) value_;
173 assert (sizeof value->f == sizeof (double));
177 return value_str_rw (value, width);
180 /* Returns the number of bytes needed to store all the values in
183 caseproto_to_n_bytes (const struct caseproto *proto)
189 for (i = 0; i < caseproto_get_n_widths (proto); i++)
191 int width = caseproto_get_width (proto, i);
193 n_bytes += width_to_n_bytes (width);
198 /* Creates and returns a new datasheet.
200 If READER is nonnull, then the datasheet initially contains
201 the contents of READER. */
203 datasheet_create (struct casereader *reader)
205 struct datasheet *ds = xmalloc (sizeof *ds);
211 ds->column_min_alloc = 8;
212 ds->rows = axis_create ();
213 ds->taint = taint_create ();
221 taint_propagate (casereader_get_taint (reader), ds->taint);
223 ds->proto = caseproto_ref (casereader_get_proto (reader));
225 ds->sources = xmalloc (sizeof *ds->sources);
226 ds->sources[0] = source_create_casereader (reader);
229 ds->n_columns = caseproto_get_n_widths (ds->proto);
230 ds->columns = xnmalloc (ds->n_columns, sizeof *ds->columns);
232 for (i = 0; i < ds->n_columns; i++)
234 struct column *column = &ds->columns[i];
235 int width = caseproto_get_width (ds->proto, i);
236 column->source = ds->sources[0];
237 column->width = width;
240 column->value_ofs = i;
241 column->byte_ofs = byte_ofs;
242 byte_ofs += width_to_n_bytes (column->width);
246 n_rows = source_get_backing_n_rows (ds->sources[0]);
248 axis_insert (ds->rows, 0, axis_extend (ds->rows, n_rows), n_rows);
254 /* Destroys datasheet DS. */
256 datasheet_destroy (struct datasheet *ds)
263 for (i = 0; i < ds->n_sources; i++)
264 source_destroy (ds->sources[i]);
266 caseproto_unref (ds->proto);
268 axis_destroy (ds->rows);
269 taint_destroy (ds->taint);
273 /* Returns the prototype for the cases in DS. The caller must
274 not unref the returned prototype. */
275 const struct caseproto *
276 datasheet_get_proto (const struct datasheet *ds_)
278 struct datasheet *ds = (struct datasheet *) ds_;
279 if (ds->proto == NULL)
283 ds->proto = caseproto_create ();
284 for (i = 0; i < ds->n_columns; i++)
285 ds->proto = caseproto_add_width (ds->proto, ds->columns[i].width);
290 /* Returns the width of the given COLUMN within DS.
291 COLUMN must be less than the number of columns in DS. */
293 datasheet_get_column_width (const struct datasheet *ds, size_t column)
295 assert (column < datasheet_get_n_columns (ds));
296 return ds->columns[column].width;
299 /* Moves datasheet DS to a new location in memory, and returns
300 the new location. Afterward, the datasheet must not be
301 accessed at its former location.
303 This function is useful for ensuring that all references to a
304 datasheet have been dropped, especially in conjunction with
305 tools like Valgrind. */
307 datasheet_rename (struct datasheet *ds)
309 struct datasheet *new = xmemdup (ds, sizeof *ds);
314 /* Returns true if datasheet DS is tainted.
315 A datasheet is tainted by an I/O error or by taint
316 propagation to the datasheet. */
318 datasheet_error (const struct datasheet *ds)
320 return taint_is_tainted (ds->taint);
323 /* Marks datasheet DS tainted. */
325 datasheet_force_error (struct datasheet *ds)
327 taint_set_taint (ds->taint);
330 /* Returns datasheet DS's taint object. */
332 datasheet_get_taint (const struct datasheet *ds)
337 /* Returns the number of rows in DS. */
339 datasheet_get_n_rows (const struct datasheet *ds)
341 return axis_get_size (ds->rows);
344 /* Returns the number of columns in DS. */
346 datasheet_get_n_columns (const struct datasheet *ds)
348 return ds->n_columns;
351 /* Inserts a column of the given WIDTH into datasheet DS just
352 before column BEFORE. Initializes the contents of each row in
353 the inserted column to VALUE (which must have width WIDTH).
355 Returns true if successful, false on failure. In case of
356 failure, the datasheet is unchanged. */
358 datasheet_insert_column (struct datasheet *ds,
359 const union value *value, int width, size_t before)
363 ds->columns = xnrealloc (ds->columns,
364 ds->n_columns + 1, sizeof *ds->columns);
365 insert_element (ds->columns, ds->n_columns, sizeof *ds->columns, before);
366 col = &ds->columns[before];
369 allocate_column (ds, width, col);
371 if (width >= 0 && !source_write_column (col, value))
373 datasheet_delete_columns (ds, before, 1);
374 taint_set_taint (ds->taint);
381 /* Deletes the N columns in DS starting from column START. */
383 datasheet_delete_columns (struct datasheet *ds, size_t start, size_t n)
389 for (i = start; i < start + n; i++)
391 struct column *column = &ds->columns[i];
392 struct source *source = column->source;
393 source_release_column (source, column->byte_ofs, column->width);
394 release_source (ds, source);
397 remove_range (ds->columns, ds->n_columns, sizeof *ds->columns, start, n);
400 caseproto_unref (ds->proto);
405 /* Moves the N columns in DS starting at position OLD_START so
406 that they then start at position NEW_START. Equivalent to
407 deleting the column rows, then inserting them at what becomes
408 position NEW_START after the deletion. */
410 datasheet_move_columns (struct datasheet *ds,
411 size_t old_start, size_t new_start,
414 move_range (ds->columns, ds->n_columns, sizeof *ds->columns,
415 old_start, new_start, n);
417 caseproto_unref (ds->proto);
421 struct resize_datasheet_value_aux
423 union value src_value;
427 void (*resize_cb) (const union value *, union value *, void *aux);
430 union value dst_value;
436 resize_datasheet_value (const void *src, void *dst, void *aux_)
438 struct resize_datasheet_value_aux *aux = aux_;
440 memcpy (value_to_data (&aux->src_value, aux->src_width),
441 (uint8_t *) src + aux->src_ofs,
442 width_to_n_bytes (aux->src_width));
444 aux->resize_cb (&aux->src_value, &aux->dst_value, aux->resize_cb_aux);
446 memcpy ((uint8_t *) dst + aux->dst_ofs,
447 value_to_data (&aux->dst_value, aux->dst_width),
448 width_to_n_bytes (aux->dst_width));
454 datasheet_resize_column (struct datasheet *ds, size_t column, int new_width,
455 void (*resize_cb) (const union value *,
456 union value *, void *aux),
459 struct column old_col;
463 assert (column < datasheet_get_n_columns (ds));
465 col = &ds->columns[column];
467 old_width = old_col.width;
473 datasheet_delete_columns (ds, column, 1);
474 datasheet_insert_column (ds, NULL, -1, column);
477 else if (old_width == -1)
480 value_init (&value, new_width);
481 value_set_missing (&value, new_width);
482 if (resize_cb != NULL)
483 resize_cb (NULL, &value, resize_cb_aux);
484 datasheet_delete_columns (ds, column, 1);
485 datasheet_insert_column (ds, &value, new_width, column);
486 value_destroy (&value, new_width);
488 else if (source_has_backing (col->source))
490 unsigned long int n_rows = axis_get_size (ds->rows);
491 unsigned long int lrow;
492 union value src, dst;
494 source_release_column (col->source, col->byte_ofs, col->width);
495 allocate_column (ds, new_width, col);
497 value_init (&src, old_width);
498 value_init (&dst, new_width);
499 for (lrow = 0; lrow < n_rows; lrow++)
501 unsigned long int prow = axis_map (ds->rows, lrow);
502 if (!source_read (&old_col, prow, &src))
504 /* FIXME: back out col changes. */
507 resize_cb (&src, &dst, resize_cb_aux);
508 if (!source_write (col, prow, &dst))
510 /* FIXME: back out col changes. */
515 release_source (ds, old_col.source);
519 struct resize_datasheet_value_aux aux;
521 source_release_column (col->source, col->byte_ofs, col->width);
522 allocate_column (ds, new_width, col);
524 value_init (&aux.src_value, old_col.width);
525 aux.src_ofs = old_col.byte_ofs;
526 aux.src_width = old_col.width;
527 aux.resize_cb = resize_cb;
528 aux.resize_cb_aux = resize_cb_aux;
529 value_init (&aux.dst_value, new_width);
530 aux.dst_ofs = col->byte_ofs;
531 aux.dst_width = new_width;
532 sparse_xarray_copy (old_col.source->data, col->source->data,
533 resize_datasheet_value, &aux);
534 value_destroy (&aux.src_value, old_width);
535 value_destroy (&aux.dst_value, new_width);
537 release_source (ds, old_col.source);
542 /* Retrieves and returns the contents of the given ROW in
543 datasheet DS. The caller owns the returned case and must
544 unref it when it is no longer needed. Returns a null pointer
547 datasheet_get_row (const struct datasheet *ds, casenumber row)
549 size_t n_columns = datasheet_get_n_columns (ds);
550 struct ccase *c = case_create (datasheet_get_proto (ds));
551 if (rw_case ((struct datasheet *) ds, OP_READ,
552 row, 0, n_columns, case_data_all_rw (c)))
561 /* Stores the contents of case C, which is destroyed, into the
562 given ROW in DS. Returns true on success, false on I/O error.
563 On failure, the given ROW might be partially modified or
566 datasheet_put_row (struct datasheet *ds, casenumber row, struct ccase *c)
568 size_t n_columns = datasheet_get_n_columns (ds);
569 bool ok = rw_case (ds, OP_WRITE, row, 0, n_columns,
570 (union value *) case_data_all (c));
575 /* Stores the values of COLUMN in DS in the given ROW in DS into
576 VALUE. The caller must have already initialized VALUE as a
577 value of the appropriate width (as returned by
578 datasheet_get_column_width (DS, COLUMN)). Returns true if
579 successful, false on I/O error. */
581 datasheet_get_value (const struct datasheet *ds, casenumber row,
582 size_t column, union value *value)
585 return rw_case ((struct datasheet *) ds, OP_READ, row, column, 1, value);
588 /* Stores VALUE into DS in the given ROW and COLUMN. VALUE must
589 have the correct width for COLUMN (as returned by
590 datasheet_get_column_width (DS, COLUMN)). Returns true if
591 successful, false on I/O error. On failure, ROW might be
592 partially modified or corrupted. */
594 datasheet_put_value (struct datasheet *ds UNUSED, casenumber row UNUSED,
595 size_t column UNUSED, const union value *value UNUSED)
597 return rw_case (ds, OP_WRITE, row, column, 1, (union value *) value);
600 /* Inserts the CNT cases at C into datasheet DS just before row
601 BEFORE. Returns true if successful, false on I/O error. On
602 failure, datasheet DS is not modified.
604 Regardless of success, this function unrefs all of the cases
607 datasheet_insert_rows (struct datasheet *ds,
608 casenumber before, struct ccase *c[],
611 casenumber added = 0;
614 unsigned long first_phy;
615 unsigned long phy_cnt;
618 /* Allocate physical rows from the pool of available
620 if (!axis_allocate (ds->rows, cnt, &first_phy, &phy_cnt))
622 /* No rows were available. Extend the row axis to make
623 some new ones available. */
625 first_phy = axis_extend (ds->rows, cnt);
628 /* Insert the new rows into the row mapping. */
629 axis_insert (ds->rows, before, first_phy, phy_cnt);
631 /* Initialize the new rows. */
632 for (i = 0; i < phy_cnt; i++)
633 if (!datasheet_put_row (ds, before + i, c[i]))
637 datasheet_delete_rows (ds, before - added, phy_cnt + added);
650 /* Deletes the CNT rows in DS starting from row FIRST. */
652 datasheet_delete_rows (struct datasheet *ds,
653 casenumber first, casenumber cnt)
657 /* Free up rows for reuse.
659 for (lrow = first; lrow < first + cnt; lrow++)
660 axis_make_available (ds->rows, axis_map (ds->rows, lrow), 1);
662 /* Remove rows from logical-to-physical mapping. */
663 axis_remove (ds->rows, first, cnt);
666 /* Moves the CNT rows in DS starting at position OLD_START so
667 that they then start at position NEW_START. Equivalent to
668 deleting the given rows, then inserting them at what becomes
669 position NEW_START after the deletion. */
671 datasheet_move_rows (struct datasheet *ds,
672 size_t old_start, size_t new_start,
675 axis_move (ds->rows, old_start, new_start, cnt);
678 static const struct casereader_random_class datasheet_reader_class;
680 /* Creates and returns a casereader whose input cases are the
681 rows in datasheet DS. From the caller's perspective, DS is
682 effectively destroyed by this operation, such that the caller
683 must not reference it again. */
685 datasheet_make_reader (struct datasheet *ds)
687 struct casereader *reader;
688 ds = datasheet_rename (ds);
689 reader = casereader_create_random (datasheet_get_proto (ds),
690 datasheet_get_n_rows (ds),
691 &datasheet_reader_class, ds);
692 taint_propagate (datasheet_get_taint (ds), casereader_get_taint (reader));
696 /* "read" function for the datasheet random casereader. */
697 static struct ccase *
698 datasheet_reader_read (struct casereader *reader UNUSED, void *ds_,
701 struct datasheet *ds = ds_;
702 if (case_idx < datasheet_get_n_rows (ds))
704 struct ccase *c = datasheet_get_row (ds, case_idx);
706 taint_set_taint (ds->taint);
713 /* "destroy" function for the datasheet random casereader. */
715 datasheet_reader_destroy (struct casereader *reader UNUSED, void *ds_)
717 struct datasheet *ds = ds_;
718 datasheet_destroy (ds);
721 /* "advance" function for the datasheet random casereader. */
723 datasheet_reader_advance (struct casereader *reader UNUSED, void *ds_,
726 struct datasheet *ds = ds_;
727 datasheet_delete_rows (ds, 0, case_cnt);
730 /* Random casereader class for a datasheet. */
731 static const struct casereader_random_class datasheet_reader_class =
733 datasheet_reader_read,
734 datasheet_reader_destroy,
735 datasheet_reader_advance,
739 allocate_column (struct datasheet *ds, int width, struct column *column)
741 caseproto_unref (ds->proto);
744 column->value_ofs = -1;
745 column->width = width;
751 n_bytes = width_to_n_bytes (width);
752 for (i = 0; i < ds->n_sources; i++)
754 column->source = ds->sources[i];
755 column->byte_ofs = source_allocate_column (column->source, n_bytes);
756 if (column->byte_ofs >= 0)
760 column->source = source_create_empty (MAX (n_bytes,
761 ds->column_min_alloc));
762 ds->sources = xnrealloc (ds->sources,
763 ds->n_sources + 1, sizeof *ds->sources);
764 ds->sources[ds->n_sources++] = column->source;
766 ds->column_min_alloc = MIN (65536, ds->column_min_alloc * 2);
768 column->byte_ofs = source_allocate_column (column->source, n_bytes);
769 assert (column->byte_ofs >= 0);
773 column->source = NULL;
774 column->byte_ofs = -1;
779 release_source (struct datasheet *ds, struct source *source)
781 if (source_has_backing (source) && !source_in_use (source))
783 /* Since only the first source to be added ever
784 has a backing, this source must have index
786 assert (source == ds->sources[0]);
787 ds->sources[0] = ds->sources[--ds->n_sources];
788 source_destroy (source);
792 /* Reads (if OP is OP_READ) or writes (if op is OP_WRITE) the
793 N_COLUMNS columns starting from column START_COLUMN in row
794 LROW to/from the N_COLUMNS values in DATA. */
796 rw_case (struct datasheet *ds, enum rw_op op,
797 casenumber lrow, size_t start_column, size_t n_columns,
803 assert (lrow < datasheet_get_n_rows (ds));
804 assert (n_columns <= datasheet_get_n_columns (ds));
805 assert (start_column + n_columns <= datasheet_get_n_columns (ds));
807 prow = axis_map (ds->rows, lrow);
808 for (i = 0; i < n_columns; i++)
810 struct column *c = &ds->columns[start_column + i];
816 ok = source_read (c, prow, &data[i]);
818 ok = source_write (c, prow, &data[i]);
822 taint_set_taint (ds->taint);
832 An axis has two functions. First, it maintains a mapping from
833 logical (client-visible) to physical (storage) ordinates. The
834 axis_map and axis_get_size functions inspect this mapping, and
835 the axis_insert, axis_remove, and axis_move functions modify
836 it. Second, it tracks the set of ordinates that are unused
837 and available for reuse. The axis_allocate,
838 axis_make_available, and axis_extend functions affect the set
839 of available ordinates. */
842 struct tower log_to_phy; /* Map from logical to physical ordinates;
843 contains "struct axis_group"s. */
844 struct range_set *available; /* Set of unused, available ordinates. */
845 unsigned long int phy_size; /* Current physical length of axis. */
848 /* A mapping from logical to physical ordinates. */
851 struct tower_node logical; /* Range of logical ordinates. */
852 unsigned long phy_start; /* First corresponding physical ordinate. */
855 static struct axis_group *axis_group_from_tower_node (struct tower_node *);
856 static struct tower_node *make_axis_group (unsigned long int phy_start);
857 static struct tower_node *split_axis (struct axis *, unsigned long int where);
858 static void merge_axis_nodes (struct axis *, struct tower_node *,
859 struct tower_node **other_node);
860 static void check_axis_merged (const struct axis *axis UNUSED);
862 /* Creates and returns a new, initially empty axis. */
866 struct axis *axis = xmalloc (sizeof *axis);
867 tower_init (&axis->log_to_phy);
868 axis->available = range_set_create ();
873 /* Returns a clone of existing axis OLD.
875 Currently this is used only by the datasheet model checker
876 driver, but it could be otherwise useful. */
878 axis_clone (const struct axis *old)
880 const struct tower_node *node;
883 new = xmalloc (sizeof *new);
884 tower_init (&new->log_to_phy);
885 new->available = range_set_clone (old->available, NULL);
886 new->phy_size = old->phy_size;
888 for (node = tower_first (&old->log_to_phy); node != NULL;
889 node = tower_next (&old->log_to_phy, node))
891 unsigned long int size = tower_node_get_size (node);
892 struct axis_group *group = tower_data (node, struct axis_group, logical);
893 tower_insert (&new->log_to_phy, size, make_axis_group (group->phy_start),
900 /* Adds the state of AXIS to the MD4 hash context CTX.
902 This is only used by the datasheet model checker driver. It
903 is unlikely to be otherwise useful. */
905 axis_hash (const struct axis *axis, struct md4_ctx *ctx)
907 const struct tower_node *tn;
908 const struct range_set_node *rsn;
910 for (tn = tower_first (&axis->log_to_phy); tn != NULL;
911 tn = tower_next (&axis->log_to_phy, tn))
913 struct axis_group *group = tower_data (tn, struct axis_group, logical);
914 unsigned long int phy_start = group->phy_start;
915 unsigned long int size = tower_node_get_size (tn);
917 md4_process_bytes (&phy_start, sizeof phy_start, ctx);
918 md4_process_bytes (&size, sizeof size, ctx);
921 for (rsn = range_set_first (axis->available); rsn != NULL;
922 rsn = range_set_next (axis->available, rsn))
924 unsigned long int start = range_set_node_get_start (rsn);
925 unsigned long int end = range_set_node_get_end (rsn);
927 md4_process_bytes (&start, sizeof start, ctx);
928 md4_process_bytes (&end, sizeof end, ctx);
931 md4_process_bytes (&axis->phy_size, sizeof axis->phy_size, ctx);
936 axis_destroy (struct axis *axis)
941 while (!tower_is_empty (&axis->log_to_phy))
943 struct tower_node *node = tower_first (&axis->log_to_phy);
944 struct axis_group *group = tower_data (node, struct axis_group,
946 tower_delete (&axis->log_to_phy, node);
950 range_set_destroy (axis->available);
954 /* Allocates up to REQUEST contiguous unused and available
955 ordinates from AXIS. If successful, stores the number
956 obtained into *WIDTH and the ordinate of the first into
957 *START, marks the ordinates as now unavailable return true.
958 On failure, which occurs only if AXIS has no unused and
959 available ordinates, returns false without modifying AXIS. */
961 axis_allocate (struct axis *axis, unsigned long int request,
962 unsigned long int *start, unsigned long int *width)
964 return range_set_allocate (axis->available, request, start, width);
967 /* Marks the WIDTH contiguous ordinates in AXIS, starting from
968 START, as unused and available. */
970 axis_make_available (struct axis *axis,
971 unsigned long int start, unsigned long int width)
973 range_set_insert (axis->available, start, width);
976 /* Extends the total physical length of AXIS by WIDTH and returns
977 the first ordinate in the new physical region. */
978 static unsigned long int
979 axis_extend (struct axis *axis, unsigned long int width)
981 unsigned long int start = axis->phy_size;
982 axis->phy_size += width;
986 /* Returns the physical ordinate in AXIS corresponding to logical
987 ordinate LOG_POS. LOG_POS must be less than the logical
989 static unsigned long int
990 axis_map (const struct axis *axis, unsigned long log_pos)
992 struct tower_node *node;
993 struct axis_group *group;
994 unsigned long int group_start;
996 node = tower_lookup (&axis->log_to_phy, log_pos, &group_start);
997 group = tower_data (node, struct axis_group, logical);
998 return group->phy_start + (log_pos - group_start);
1001 /* Returns the logical length of AXIS. */
1002 static unsigned long
1003 axis_get_size (const struct axis *axis)
1005 return tower_height (&axis->log_to_phy);
1008 /* Inserts the CNT contiguous physical ordinates starting at
1009 PHY_START into AXIS's logical-to-physical mapping, starting at
1010 logical position LOG_START. */
1012 axis_insert (struct axis *axis,
1013 unsigned long int log_start, unsigned long int phy_start,
1014 unsigned long int cnt)
1016 struct tower_node *before = split_axis (axis, log_start);
1017 struct tower_node *new = make_axis_group (phy_start);
1018 tower_insert (&axis->log_to_phy, cnt, new, before);
1019 merge_axis_nodes (axis, new, NULL);
1020 check_axis_merged (axis);
1023 /* Removes CNT ordinates from AXIS's logical-to-physical mapping
1024 starting at logical position START. */
1026 axis_remove (struct axis *axis,
1027 unsigned long int start, unsigned long int cnt)
1031 struct tower_node *last = split_axis (axis, start + cnt);
1032 struct tower_node *cur, *next;
1033 for (cur = split_axis (axis, start); cur != last; cur = next)
1035 next = tower_delete (&axis->log_to_phy, cur);
1036 free (axis_group_from_tower_node (cur));
1038 merge_axis_nodes (axis, last, NULL);
1039 check_axis_merged (axis);
1043 /* Moves the CNT ordinates in AXIS's logical-to-mapping starting
1044 at logical position OLD_START so that they then start at
1045 position NEW_START. */
1047 axis_move (struct axis *axis,
1048 unsigned long int old_start, unsigned long int new_start,
1049 unsigned long int cnt)
1051 if (cnt > 0 && old_start != new_start)
1053 struct tower_node *old_first, *old_last, *new_first;
1054 struct tower_node *merge1, *merge2;
1055 struct tower tmp_array;
1057 /* Move ordinates OLD_START...(OLD_START + CNT) into new,
1058 separate TMP_ARRAY. */
1059 old_first = split_axis (axis, old_start);
1060 old_last = split_axis (axis, old_start + cnt);
1061 tower_init (&tmp_array);
1062 tower_splice (&tmp_array, NULL,
1063 &axis->log_to_phy, old_first, old_last);
1064 merge_axis_nodes (axis, old_last, NULL);
1065 check_axis_merged (axis);
1067 /* Move TMP_ARRAY to position NEW_START. */
1068 new_first = split_axis (axis, new_start);
1069 merge1 = tower_first (&tmp_array);
1070 merge2 = tower_last (&tmp_array);
1071 if (merge2 == merge1)
1073 tower_splice (&axis->log_to_phy, new_first, &tmp_array, old_first, NULL);
1074 merge_axis_nodes (axis, merge1, &merge2);
1075 merge_axis_nodes (axis, merge2, NULL);
1076 check_axis_merged (axis);
1080 /* Returns the axis_group in which NODE is embedded. */
1081 static struct axis_group *
1082 axis_group_from_tower_node (struct tower_node *node)
1084 return tower_data (node, struct axis_group, logical);
1087 /* Creates and returns a new axis_group at physical position
1089 static struct tower_node *
1090 make_axis_group (unsigned long phy_start)
1092 struct axis_group *group = xmalloc (sizeof *group);
1093 group->phy_start = phy_start;
1094 return &group->logical;
1097 /* Returns the tower_node in AXIS's logical-to-physical map whose
1098 bottom edge is at exact level WHERE. If there is no such
1099 tower_node in AXIS's logical-to-physical map, then split_axis
1100 creates one by breaking an existing tower_node into two
1101 separate ones, unless WHERE is equal to the tower height, in
1102 which case it simply returns a null pointer. */
1103 static struct tower_node *
1104 split_axis (struct axis *axis, unsigned long int where)
1106 unsigned long int group_start;
1107 struct tower_node *group_node;
1108 struct axis_group *group;
1110 assert (where <= tower_height (&axis->log_to_phy));
1111 if (where >= tower_height (&axis->log_to_phy))
1114 group_node = tower_lookup (&axis->log_to_phy, where, &group_start);
1115 group = axis_group_from_tower_node (group_node);
1116 if (where > group_start)
1118 unsigned long int size_1 = where - group_start;
1119 unsigned long int size_2 = tower_node_get_size (group_node) - size_1;
1120 struct tower_node *next = tower_next (&axis->log_to_phy, group_node);
1121 struct tower_node *new = make_axis_group (group->phy_start + size_1);
1122 tower_resize (&axis->log_to_phy, group_node, size_1);
1123 tower_insert (&axis->log_to_phy, size_2, new, next);
1127 return &group->logical;
1130 /* Within AXIS, attempts to merge NODE (or the last node in AXIS,
1131 if NODE is null) with its neighbor nodes. This is possible
1132 when logically adjacent nodes are also adjacent physically (in
1135 When a merge occurs, and OTHER_NODE is non-null and points to
1136 the node to be deleted, this function also updates
1137 *OTHER_NODE, if necessary, to ensure that it remains a valid
1140 merge_axis_nodes (struct axis *axis, struct tower_node *node,
1141 struct tower_node **other_node)
1143 struct tower *t = &axis->log_to_phy;
1144 struct axis_group *group;
1145 struct tower_node *next, *prev;
1147 /* Find node to potentially merge with neighbors. */
1149 node = tower_last (t);
1152 group = axis_group_from_tower_node (node);
1154 /* Try to merge NODE with successor. */
1155 next = tower_next (t, node);
1158 struct axis_group *next_group = axis_group_from_tower_node (next);
1159 unsigned long this_height = tower_node_get_size (node);
1161 if (group->phy_start + this_height == next_group->phy_start)
1163 unsigned long next_height = tower_node_get_size (next);
1164 tower_resize (t, node, this_height + next_height);
1165 if (other_node != NULL && *other_node == next)
1166 *other_node = tower_next (t, *other_node);
1167 tower_delete (t, next);
1172 /* Try to merge NODE with predecessor. */
1173 prev = tower_prev (t, node);
1176 struct axis_group *prev_group = axis_group_from_tower_node (prev);
1177 unsigned long prev_height = tower_node_get_size (prev);
1179 if (prev_group->phy_start + prev_height == group->phy_start)
1181 unsigned long this_height = tower_node_get_size (node);
1182 group->phy_start = prev_group->phy_start;
1183 tower_resize (t, node, this_height + prev_height);
1184 if (other_node != NULL && *other_node == prev)
1185 *other_node = tower_next (t, *other_node);
1186 tower_delete (t, prev);
1192 /* Verify that all potentially merge-able nodes in AXIS are
1195 check_axis_merged (const struct axis *axis UNUSED)
1197 #if ASSERT_LEVEL >= 10
1198 struct tower_node *prev, *node;
1200 for (prev = NULL, node = tower_first (&axis->log_to_phy); node != NULL;
1201 prev = node, node = tower_next (&axis->log_to_phy, node))
1204 struct axis_group *prev_group = axis_group_from_tower_node (prev);
1205 unsigned long prev_height = tower_node_get_size (prev);
1206 struct axis_group *node_group = axis_group_from_tower_node (node);
1207 assert (prev_group->phy_start + prev_height != node_group->phy_start);
1214 /* Creates and returns an empty, unbacked source with N_BYTES
1215 bytes per case, none of which are initially in use. */
1216 static struct source *
1217 source_create_empty (size_t n_bytes)
1219 struct source *source = xmalloc (sizeof *source);
1220 size_t row_size = n_bytes + 4 * sizeof (void *);
1221 size_t max_memory_rows = settings_get_workspace () / row_size;
1222 source->avail = range_set_create ();
1223 range_set_insert (source->avail, 0, n_bytes);
1224 source->data = sparse_xarray_create (n_bytes, MAX (max_memory_rows, 4));
1225 source->backing = NULL;
1226 source->backing_rows = 0;
1231 /* Creates and returns a new source backed by READER and with the
1232 same initial dimensions and content. */
1233 static struct source *
1234 source_create_casereader (struct casereader *reader)
1236 const struct caseproto *proto = casereader_get_proto (reader);
1237 size_t n_bytes = caseproto_to_n_bytes (proto);
1238 struct source *source = source_create_empty (n_bytes);
1242 range_set_delete (source->avail, 0, n_bytes);
1243 source->backing = reader;
1244 source->backing_rows = casereader_count_cases (reader);
1247 n_columns = caseproto_get_n_widths (proto);
1248 for (i = 0; i < n_columns; i++)
1249 if (caseproto_get_width (proto, i) >= 0)
1255 /* Returns a clone of source OLD with the same data and backing
1258 Currently this is used only by the datasheet model checker
1259 driver, but it could be otherwise useful. */
1260 static struct source *
1261 source_clone (const struct source *old)
1263 struct source *new = xmalloc (sizeof *new);
1264 new->avail = range_set_clone (old->avail, NULL);
1265 new->data = sparse_xarray_clone (old->data);
1266 new->backing = old->backing != NULL ? casereader_clone (old->backing) : NULL;
1267 new->backing_rows = old->backing_rows;
1268 new->n_used = old->n_used;
1269 if (new->data == NULL)
1271 source_destroy (new);
1278 source_allocate_column (struct source *source, int width)
1280 unsigned long int start;
1283 assert (width >= 0);
1284 n_bytes = width_to_n_bytes (width);
1285 if (source->backing == NULL
1286 && range_set_allocate_fully (source->avail, n_bytes, &start))
1293 source_release_column (struct source *source, int ofs, int width)
1295 assert (width >= 0);
1296 range_set_insert (source->avail, ofs, width_to_n_bytes (width));
1297 if (source->backing != NULL)
1301 /* Returns true if SOURCE has any columns in use,
1304 source_in_use (const struct source *source)
1306 return source->n_used > 0;
1309 /* Destroys SOURCE and its data and backing, if any. */
1311 source_destroy (struct source *source)
1315 range_set_destroy (source->avail);
1316 sparse_xarray_destroy (source->data);
1317 casereader_destroy (source->backing);
1322 /* Returns the number of rows in SOURCE's backing casereader
1323 (SOURCE must have a backing casereader). */
1325 source_get_backing_n_rows (const struct source *source)
1327 assert (source_has_backing (source));
1328 return source->backing_rows;
1331 /* Reads the given COLUMN from SOURCE in the given ROW, into
1332 VALUE. Returns true if successful, false on I/O error.
1334 The caller must have initialized VALUE with the proper
1337 source_read (const struct column *column, casenumber row, union value *value)
1339 struct source *source = column->source;
1341 assert (column->width >= 0);
1342 if (source->backing == NULL
1343 || sparse_xarray_contains_row (source->data, row))
1344 return sparse_xarray_read (source->data, row, column->byte_ofs,
1345 width_to_n_bytes (column->width),
1346 value_to_data (value, column->width));
1349 struct ccase *c = casereader_peek (source->backing, row);
1350 bool ok = c != NULL;
1353 value_copy (value, case_data_idx (c, column->value_ofs),
1362 copy_case_into_source (struct source *source, struct ccase *c, casenumber row)
1364 const struct caseproto *proto = casereader_get_proto (source->backing);
1365 size_t n_widths = caseproto_get_n_widths (proto);
1370 for (i = 0; i < n_widths; i++)
1372 int width = caseproto_get_width (proto, i);
1375 int n_bytes = width_to_n_bytes (width);
1376 if (!sparse_xarray_write (source->data, row, ofs, n_bytes,
1377 value_to_data (case_data_idx (c, i),
1386 /* Writes VALUE to SOURCE in the given ROW and COLUMN. Returns
1387 true if successful, false on I/O error. On error, the row's
1388 data may be completely or partially corrupted, both inside and
1389 outside the region to be written. */
1391 source_write (const struct column *column, casenumber row,
1392 const union value *value)
1394 struct source *source = column->source;
1395 struct casereader *backing = source->backing;
1397 assert (column->width >= 0);
1399 && !sparse_xarray_contains_row (source->data, row)
1400 && row < source->backing_rows)
1405 c = casereader_peek (backing, row);
1409 ok = copy_case_into_source (source, c, row);
1415 return sparse_xarray_write (source->data, row, column->byte_ofs,
1416 width_to_n_bytes (column->width),
1417 value_to_data (value, column->width));
1420 /* Within SOURCE, which must not have a backing casereader,
1421 writes the VALUE_CNT values in VALUES_CNT to the VALUE_CNT
1422 columns starting from START_COLUMN, in every row, even in rows
1423 not yet otherwise initialized. Returns true if successful,
1424 false if an I/O error occurs.
1426 We don't support backing != NULL because (1) it's harder and
1427 (2) this function is only called by
1428 datasheet_insert_column, which doesn't reuse columns from
1429 sources that are backed by casereaders. */
1431 source_write_column (struct column *column, const union value *value)
1433 int width = column->width;
1435 assert (column->source->backing == NULL);
1436 assert (width >= 0);
1438 return sparse_xarray_write_columns (column->source->data, column->byte_ofs,
1439 width_to_n_bytes (width),
1440 value_to_data (value, width));
1443 /* Returns true if SOURCE has a backing casereader, false
1446 source_has_backing (const struct source *source)
1448 return source->backing != NULL;
1451 /* Datasheet model checker test driver. */
1454 get_source_index (const struct datasheet *ds, const struct source *source)
1458 for (i = 0; i < ds->n_sources; i++)
1459 if (ds->sources[i] == source)
1464 /* Clones the structure and contents of ODS into a new datasheet,
1465 and returns the new datasheet. */
1467 clone_datasheet (const struct datasheet *ods)
1469 struct datasheet *ds;
1472 ds = xmalloc (sizeof *ds);
1474 ds->sources = xmalloc (ods->n_sources * sizeof *ds->sources);
1475 for (i = 0; i < ods->n_sources; i++)
1476 ds->sources[i] = source_clone (ods->sources[i]);
1477 ds->n_sources = ods->n_sources;
1479 ds->proto = ods->proto != NULL ? caseproto_ref (ods->proto) : NULL;
1480 ds->columns = xmemdup (ods->columns, ods->n_columns * sizeof *ods->columns);
1481 for (i = 0; i < ods->n_columns; i++)
1482 ds->columns[i].source
1483 = ds->sources[get_source_index (ods, ods->columns[i].source)];
1484 ds->n_columns = ods->n_columns;
1485 ds->column_min_alloc = ods->column_min_alloc;
1487 ds->rows = axis_clone (ods->rows);
1489 ds->taint = taint_create ();
1494 /* Hashes the structure of datasheet DS and returns the hash.
1495 We use MD4 because it is much faster than MD5 or SHA-1 but its
1496 collision resistance is just as good. */
1498 hash_datasheet (const struct datasheet *ds)
1500 unsigned int hash[DIV_RND_UP (20, sizeof (unsigned int))];
1504 md4_init_ctx (&ctx);
1505 for (i = 0; i < ds->n_columns; i++)
1507 const struct column *column = &ds->columns[i];
1508 int source_n_bytes = sparse_xarray_get_n_columns (column->source->data);
1509 md4_process_bytes (&source_n_bytes, sizeof source_n_bytes, &ctx);
1510 /*md4_process_bytes (&column->byte_ofs, sizeof column->byte_ofs, &ctx);*/
1511 md4_process_bytes (&column->value_ofs, sizeof column->value_ofs, &ctx);
1512 md4_process_bytes (&column->width, sizeof column->width, &ctx);
1514 axis_hash (ds->rows, &ctx);
1515 md4_process_bytes (&ds->column_min_alloc, sizeof ds->column_min_alloc, &ctx);
1516 md4_finish_ctx (&ctx, hash);