1 /* PSPP - a program for statistical analysis.
2 Copyright (C) 2007, 2009, 2010, 2011, 2012, 2013 Free Software Foundation, Inc.
4 This program is free software: you can redistribute it and/or modify
5 it under the terms of the GNU General Public License as published by
6 the Free Software Foundation, either version 3 of the License, or
7 (at your option) any later version.
9 This program is distributed in the hope that it will be useful,
10 but WITHOUT ANY WARRANTY; without even the implied warranty of
11 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12 GNU General Public License for more details.
14 You should have received a copy of the GNU General Public License
15 along with this program. If not, see <http://www.gnu.org/licenses/>. */
19 #include "data/datasheet.h"
24 #include "data/casereader-provider.h"
25 #include "data/casereader.h"
26 #include "data/casewriter.h"
27 #include "data/lazy-casereader.h"
28 #include "data/settings.h"
29 #include "libpspp/array.h"
30 #include "libpspp/assertion.h"
31 #include "libpspp/misc.h"
32 #include "libpspp/range-map.h"
33 #include "libpspp/range-set.h"
34 #include "libpspp/sparse-xarray.h"
35 #include "libpspp/taint.h"
36 #include "libpspp/tower.h"
38 #include "gl/minmax.h"
40 #include "gl/xalloc.h"
44 static struct axis *axis_create (void);
45 static struct axis *axis_clone (const struct axis *);
46 static void axis_destroy (struct axis *);
48 static void axis_hash (const struct axis *, struct md4_ctx *);
50 static bool axis_allocate (struct axis *, unsigned long int request,
51 unsigned long int *start,
52 unsigned long int *width);
53 static void axis_make_available (struct axis *,
54 unsigned long int start,
55 unsigned long int width);
56 static unsigned long int axis_extend (struct axis *, unsigned long int width);
58 static unsigned long int axis_map (const struct axis *, unsigned long log_pos);
60 static unsigned long axis_get_size (const struct axis *);
61 static void axis_insert (struct axis *,
62 unsigned long int log_start,
63 unsigned long int phy_start,
64 unsigned long int cnt);
65 static void axis_remove (struct axis *,
66 unsigned long int start, unsigned long int cnt);
67 static void axis_move (struct axis *,
68 unsigned long int old_start,
69 unsigned long int new_start,
70 unsigned long int cnt);
72 static struct source *source_create_empty (size_t n_bytes);
73 static struct source *source_create_casereader (struct casereader *);
74 static struct source *source_clone (const struct source *);
75 static void source_destroy (struct source *);
77 static casenumber source_get_backing_n_rows (const struct source *);
79 static int source_allocate_column (struct source *, int width);
80 static void source_release_column (struct source *, int ofs, int width);
81 static bool source_in_use (const struct source *);
83 static bool source_read (const struct column *, casenumber row, union value *,
85 static bool source_write (const struct column *, casenumber row,
86 const union value *, size_t n);
87 static bool source_write_column (struct column *, const union value *);
88 static bool source_has_backing (const struct source *);
90 static int get_source_index (const struct datasheet *ds, const struct source *source);
92 /* A datasheet is internally composed from a set of data files,
93 called "sources". The sources that make up a datasheet must
94 have the same number of rows (cases), but their numbers of
95 columns (variables) may vary.
97 A datasheet's external view is produced by mapping (permuting
98 and selecting) its internal data. Thus, we can rearrange or
99 delete rows or columns simply by modifying the mapping. We
100 add rows by adding rows to each source and to the row mapping.
101 We add columns by adding a new source, then adding that source
102 to the column mapping.
104 Each source in a datasheet can be a casereader or a
105 sparse_xarray. Casereaders are read-only, so when sources
106 made from casereaders need to be modified, it is done
107 "virtually" through being overlaid by a sparse_xarray. */
110 struct range_set *avail; /* Free bytes are set to 1s. */
111 struct sparse_xarray *data; /* Data at top level, atop the backing. */
112 struct casereader *backing; /* Backing casereader (or null). */
113 casenumber backing_rows; /* Number of rows in backing (if backed). */
114 size_t n_used; /* Number of column in use (if backed). */
117 /* A logical column. */
120 struct source *source; /* Source of the underlying physical column. */
121 int value_ofs; /* If 'source' has a backing casereader,
122 column's value offset in its cases. */
123 int byte_ofs; /* Byte offset in source's sparse_xarray. */
124 int width; /* 0=numeric, otherwise string width. */
131 struct source **sources; /* Sources, in no particular order. */
132 size_t n_sources; /* Number of sources. */
135 struct caseproto *proto; /* Prototype for rows (initialized lazily). */
136 struct column *columns; /* Logical to physical column mapping. */
137 size_t n_columns; /* Number of logical columns. */
138 unsigned column_min_alloc; /* Min. # of columns to put in a new source. */
141 struct axis *rows; /* Logical to physical row mapping. */
144 struct taint *taint; /* Indicates corrupted data. */
147 /* Is this operation a read or a write? */
154 static void allocate_column (struct datasheet *, int width, struct column *);
155 static void release_source (struct datasheet *, struct source *);
156 static bool rw_case (struct datasheet *ds, enum rw_op op,
157 casenumber lrow, size_t start_column, size_t n_columns,
160 /* Returns the number of bytes needed to store a value with the
161 given WIDTH on disk. */
163 width_to_n_bytes (int width)
165 return width == 0 ? sizeof (double) : width;
168 /* Returns the address of the data in VALUE (for reading or
169 writing to/from disk). VALUE must have the given WIDTH. */
171 value_to_data (const union value *value_, int width)
173 union value *value = (union value *) value_;
174 assert (sizeof value->f == sizeof (double));
178 return value_str_rw (value, width);
181 /* Returns the number of bytes needed to store all the values in
184 caseproto_to_n_bytes (const struct caseproto *proto)
190 for (i = 0; i < caseproto_get_n_widths (proto); i++)
192 int width = caseproto_get_width (proto, i);
194 n_bytes += width_to_n_bytes (width);
199 /* Creates and returns a new datasheet.
201 If READER is nonnull, then the datasheet initially contains
202 the contents of READER. */
204 datasheet_create (struct casereader *reader)
206 struct datasheet *ds = xmalloc (sizeof *ds);
212 ds->column_min_alloc = 8;
213 ds->rows = axis_create ();
214 ds->taint = taint_create ();
222 taint_propagate (casereader_get_taint (reader), ds->taint);
224 ds->proto = caseproto_ref (casereader_get_proto (reader));
226 ds->sources = xmalloc (sizeof *ds->sources);
227 ds->sources[0] = source_create_casereader (reader);
230 ds->n_columns = caseproto_get_n_widths (ds->proto);
231 ds->columns = xnmalloc (ds->n_columns, sizeof *ds->columns);
233 for (i = 0; i < ds->n_columns; i++)
235 struct column *column = &ds->columns[i];
236 int width = caseproto_get_width (ds->proto, i);
237 column->source = ds->sources[0];
238 column->width = width;
241 column->value_ofs = i;
242 column->byte_ofs = byte_ofs;
243 byte_ofs += width_to_n_bytes (column->width);
247 n_rows = source_get_backing_n_rows (ds->sources[0]);
249 axis_insert (ds->rows, 0, axis_extend (ds->rows, n_rows), n_rows);
255 /* Destroys datasheet DS. */
257 datasheet_destroy (struct datasheet *ds)
264 for (i = 0; i < ds->n_sources; i++)
265 source_destroy (ds->sources[i]);
267 caseproto_unref (ds->proto);
269 axis_destroy (ds->rows);
270 taint_destroy (ds->taint);
274 /* Returns the prototype for the cases in DS. The caller must
275 not unref the returned prototype. */
276 const struct caseproto *
277 datasheet_get_proto (const struct datasheet *ds_)
279 struct datasheet *ds = CONST_CAST (struct datasheet *, ds_);
280 if (ds->proto == NULL)
284 ds->proto = caseproto_create ();
285 for (i = 0; i < ds->n_columns; i++)
286 ds->proto = caseproto_add_width (ds->proto, ds->columns[i].width);
291 /* Returns the width of the given COLUMN within DS.
292 COLUMN must be less than the number of columns in DS. */
294 datasheet_get_column_width (const struct datasheet *ds, size_t column)
296 assert (column < datasheet_get_n_columns (ds));
297 return ds->columns[column].width;
300 /* Moves datasheet DS to a new location in memory, and returns
301 the new location. Afterward, the datasheet must not be
302 accessed at its former location.
304 This function is useful for ensuring that all references to a
305 datasheet have been dropped, especially in conjunction with
306 tools like Valgrind. */
308 datasheet_rename (struct datasheet *ds)
310 struct datasheet *new = xmemdup (ds, sizeof *ds);
315 /* Returns true if datasheet DS is tainted.
316 A datasheet is tainted by an I/O error or by taint
317 propagation to the datasheet. */
319 datasheet_error (const struct datasheet *ds)
321 return taint_is_tainted (ds->taint);
324 /* Marks datasheet DS tainted. */
326 datasheet_force_error (struct datasheet *ds)
328 taint_set_taint (ds->taint);
331 /* Returns datasheet DS's taint object. */
333 datasheet_get_taint (const struct datasheet *ds)
338 /* Returns the number of rows in DS. */
340 datasheet_get_n_rows (const struct datasheet *ds)
342 return axis_get_size (ds->rows);
345 /* Returns the number of columns in DS. */
347 datasheet_get_n_columns (const struct datasheet *ds)
349 return ds->n_columns;
352 /* Inserts a column of the given WIDTH into datasheet DS just
353 before column BEFORE. Initializes the contents of each row in
354 the inserted column to VALUE (which must have width WIDTH).
356 Returns true if successful, false on failure. In case of
357 failure, the datasheet is unchanged. */
359 datasheet_insert_column (struct datasheet *ds,
360 const union value *value, int width, size_t before)
364 assert (before <= ds->n_columns);
366 ds->columns = xnrealloc (ds->columns,
367 ds->n_columns + 1, sizeof *ds->columns);
368 insert_element (ds->columns, ds->n_columns, sizeof *ds->columns, before);
369 col = &ds->columns[before];
372 allocate_column (ds, width, col);
374 if (width >= 0 && !source_write_column (col, value))
376 datasheet_delete_columns (ds, before, 1);
377 taint_set_taint (ds->taint);
384 /* Deletes the N columns in DS starting from column START. */
386 datasheet_delete_columns (struct datasheet *ds, size_t start, size_t n)
388 assert (start + n <= ds->n_columns);
394 for (i = start; i < start + n; i++)
396 struct column *column = &ds->columns[i];
397 struct source *source = column->source;
398 source_release_column (source, column->byte_ofs, column->width);
399 release_source (ds, source);
402 remove_range (ds->columns, ds->n_columns, sizeof *ds->columns, start, n);
405 caseproto_unref (ds->proto);
410 /* Moves the N columns in DS starting at position OLD_START so
411 that they then start at position NEW_START. Equivalent to
412 deleting the column rows, then inserting them at what becomes
413 position NEW_START after the deletion. */
415 datasheet_move_columns (struct datasheet *ds,
416 size_t old_start, size_t new_start,
419 assert (old_start + n <= ds->n_columns);
420 assert (new_start + n <= ds->n_columns);
422 move_range (ds->columns, ds->n_columns, sizeof *ds->columns,
423 old_start, new_start, n);
425 caseproto_unref (ds->proto);
429 struct resize_datasheet_value_aux
431 union value src_value;
435 void (*resize_cb) (const union value *, union value *, const void *aux);
436 const void *resize_cb_aux;
438 union value dst_value;
444 resize_datasheet_value (const void *src, void *dst, void *aux_)
446 struct resize_datasheet_value_aux *aux = aux_;
448 memcpy (value_to_data (&aux->src_value, aux->src_width),
449 (uint8_t *) src + aux->src_ofs,
450 width_to_n_bytes (aux->src_width));
452 aux->resize_cb (&aux->src_value, &aux->dst_value, aux->resize_cb_aux);
454 memcpy ((uint8_t *) dst + aux->dst_ofs,
455 value_to_data (&aux->dst_value, aux->dst_width),
456 width_to_n_bytes (aux->dst_width));
462 datasheet_resize_column (struct datasheet *ds, size_t column, int new_width,
463 void (*resize_cb) (const union value *,
464 union value *, const void *aux),
465 const void *resize_cb_aux)
467 struct column old_col;
471 assert (column < datasheet_get_n_columns (ds));
473 col = &ds->columns[column];
475 old_width = old_col.width;
481 datasheet_delete_columns (ds, column, 1);
482 datasheet_insert_column (ds, NULL, -1, column);
485 else if (old_width == -1)
488 value_init (&value, new_width);
489 value_set_missing (&value, new_width);
490 if (resize_cb != NULL)
491 resize_cb (NULL, &value, resize_cb_aux);
492 datasheet_delete_columns (ds, column, 1);
493 datasheet_insert_column (ds, &value, new_width, column);
494 value_destroy (&value, new_width);
496 else if (source_has_backing (col->source))
498 unsigned long int n_rows = axis_get_size (ds->rows);
499 unsigned long int lrow;
500 union value src, dst;
502 source_release_column (col->source, col->byte_ofs, col->width);
503 allocate_column (ds, new_width, col);
505 value_init (&src, old_width);
506 value_init (&dst, new_width);
507 for (lrow = 0; lrow < n_rows; lrow++)
509 unsigned long int prow = axis_map (ds->rows, lrow);
510 if (!source_read (&old_col, prow, &src, 1))
512 /* FIXME: back out col changes. */
515 resize_cb (&src, &dst, resize_cb_aux);
516 if (!source_write (col, prow, &dst, 1))
518 /* FIXME: back out col changes. */
522 value_destroy (&src, old_width);
523 value_destroy (&dst, new_width);
527 release_source (ds, old_col.source);
531 struct resize_datasheet_value_aux aux;
533 source_release_column (col->source, col->byte_ofs, col->width);
534 allocate_column (ds, new_width, col);
536 value_init (&aux.src_value, old_col.width);
537 aux.src_ofs = old_col.byte_ofs;
538 aux.src_width = old_col.width;
539 aux.resize_cb = resize_cb;
540 aux.resize_cb_aux = resize_cb_aux;
541 value_init (&aux.dst_value, new_width);
542 aux.dst_ofs = col->byte_ofs;
543 aux.dst_width = new_width;
544 sparse_xarray_copy (old_col.source->data, col->source->data,
545 resize_datasheet_value, &aux);
546 value_destroy (&aux.src_value, old_width);
547 value_destroy (&aux.dst_value, new_width);
549 release_source (ds, old_col.source);
554 /* Retrieves and returns the contents of the given ROW in
555 datasheet DS. The caller owns the returned case and must
556 unref it when it is no longer needed. Returns a null pointer
559 datasheet_get_row (const struct datasheet *ds, casenumber row)
561 size_t n_columns = datasheet_get_n_columns (ds);
562 struct ccase *c = case_create (datasheet_get_proto (ds));
563 if (rw_case (CONST_CAST (struct datasheet *, ds), OP_READ,
564 row, 0, n_columns, case_data_all_rw (c)))
573 /* Stores the contents of case C, which is destroyed, into the
574 given ROW in DS. Returns true on success, false on I/O error.
575 On failure, the given ROW might be partially modified or
578 datasheet_put_row (struct datasheet *ds, casenumber row, struct ccase *c)
580 size_t n_columns = datasheet_get_n_columns (ds);
581 bool ok = rw_case (ds, OP_WRITE, row, 0, n_columns,
582 (union value *) case_data_all (c));
587 /* Stores the values of COLUMN in DS in the given ROW in DS into
588 VALUE. The caller must have already initialized VALUE as a
589 value of the appropriate width (as returned by
590 datasheet_get_column_width (DS, COLUMN)). Returns true if
591 successful, false on I/O error. */
593 datasheet_get_value (const struct datasheet *ds, casenumber row,
594 size_t column, union value *value)
597 return rw_case (CONST_CAST (struct datasheet *, ds), OP_READ,
598 row, column, 1, value);
601 /* Stores VALUE into DS in the given ROW and COLUMN. VALUE must
602 have the correct width for COLUMN (as returned by
603 datasheet_get_column_width (DS, COLUMN)). Returns true if
604 successful, false on I/O error. On failure, ROW might be
605 partially modified or corrupted. */
607 datasheet_put_value (struct datasheet *ds UNUSED, casenumber row UNUSED,
608 size_t column UNUSED, const union value *value UNUSED)
610 return rw_case (ds, OP_WRITE, row, column, 1, (union value *) value);
613 /* Inserts the CNT cases at C into datasheet DS just before row
614 BEFORE. Returns true if successful, false on I/O error. On
615 failure, datasheet DS is not modified.
617 Regardless of success, this function unrefs all of the cases
620 datasheet_insert_rows (struct datasheet *ds,
621 casenumber before, struct ccase *c[],
624 casenumber added = 0;
627 unsigned long first_phy;
628 unsigned long phy_cnt;
631 /* Allocate physical rows from the pool of available
633 if (!axis_allocate (ds->rows, cnt, &first_phy, &phy_cnt))
635 /* No rows were available. Extend the row axis to make
636 some new ones available. */
638 first_phy = axis_extend (ds->rows, cnt);
641 /* Insert the new rows into the row mapping. */
642 axis_insert (ds->rows, before, first_phy, phy_cnt);
644 /* Initialize the new rows. */
645 for (i = 0; i < phy_cnt; i++)
646 if (!datasheet_put_row (ds, before + i, c[i]))
650 datasheet_delete_rows (ds, before - added, phy_cnt + added);
663 /* Deletes the CNT rows in DS starting from row FIRST. */
665 datasheet_delete_rows (struct datasheet *ds,
666 casenumber first, casenumber cnt)
670 /* Free up rows for reuse.
672 for (lrow = first; lrow < first + cnt; lrow++)
673 axis_make_available (ds->rows, axis_map (ds->rows, lrow), 1);
675 /* Remove rows from logical-to-physical mapping. */
676 axis_remove (ds->rows, first, cnt);
679 /* Moves the CNT rows in DS starting at position OLD_START so
680 that they then start at position NEW_START. Equivalent to
681 deleting the given rows, then inserting them at what becomes
682 position NEW_START after the deletion. */
684 datasheet_move_rows (struct datasheet *ds,
685 size_t old_start, size_t new_start,
688 axis_move (ds->rows, old_start, new_start, cnt);
691 static const struct casereader_random_class datasheet_reader_class;
693 /* Creates and returns a casereader whose input cases are the
694 rows in datasheet DS. From the caller's perspective, DS is
695 effectively destroyed by this operation, such that the caller
696 must not reference it again. */
698 datasheet_make_reader (struct datasheet *ds)
700 struct casereader *reader;
701 ds = datasheet_rename (ds);
702 reader = casereader_create_random (datasheet_get_proto (ds),
703 datasheet_get_n_rows (ds),
704 &datasheet_reader_class, ds);
705 taint_propagate (datasheet_get_taint (ds), casereader_get_taint (reader));
709 /* "read" function for the datasheet random casereader. */
710 static struct ccase *
711 datasheet_reader_read (struct casereader *reader UNUSED, void *ds_,
714 struct datasheet *ds = ds_;
715 if (case_idx < datasheet_get_n_rows (ds))
717 struct ccase *c = datasheet_get_row (ds, case_idx);
719 taint_set_taint (ds->taint);
726 /* "destroy" function for the datasheet random casereader. */
728 datasheet_reader_destroy (struct casereader *reader UNUSED, void *ds_)
730 struct datasheet *ds = ds_;
731 datasheet_destroy (ds);
734 /* "advance" function for the datasheet random casereader. */
736 datasheet_reader_advance (struct casereader *reader UNUSED, void *ds_,
739 struct datasheet *ds = ds_;
740 datasheet_delete_rows (ds, 0, case_cnt);
743 /* Random casereader class for a datasheet. */
744 static const struct casereader_random_class datasheet_reader_class =
746 datasheet_reader_read,
747 datasheet_reader_destroy,
748 datasheet_reader_advance,
752 allocate_column (struct datasheet *ds, int width, struct column *column)
754 caseproto_unref (ds->proto);
757 column->value_ofs = -1;
758 column->width = width;
764 n_bytes = width_to_n_bytes (width);
765 for (i = 0; i < ds->n_sources; i++)
767 column->source = ds->sources[i];
768 column->byte_ofs = source_allocate_column (column->source, n_bytes);
769 if (column->byte_ofs >= 0)
773 column->source = source_create_empty (MAX (n_bytes,
774 ds->column_min_alloc));
775 ds->sources = xnrealloc (ds->sources,
776 ds->n_sources + 1, sizeof *ds->sources);
777 ds->sources[ds->n_sources++] = column->source;
779 ds->column_min_alloc = MIN (65536, ds->column_min_alloc * 2);
781 column->byte_ofs = source_allocate_column (column->source, n_bytes);
782 assert (column->byte_ofs >= 0);
786 column->source = NULL;
787 column->byte_ofs = -1;
792 release_source (struct datasheet *ds, struct source *source)
794 if (source_has_backing (source) && !source_in_use (source))
796 /* Since only the first source to be added ever
797 has a backing, this source must have index
799 assert (source == ds->sources[0]);
800 ds->sources[0] = ds->sources[--ds->n_sources];
801 source_destroy (source);
805 /* Reads (if OP is OP_READ) or writes (if op is OP_WRITE) the
806 N_COLUMNS columns starting from column START_COLUMN in row
807 LROW to/from the N_COLUMNS values in DATA. */
809 rw_case (struct datasheet *ds, enum rw_op op,
810 casenumber lrow, size_t start_column, size_t n_columns,
813 struct column *columns = &ds->columns[start_column];
817 assert (lrow < datasheet_get_n_rows (ds));
818 assert (n_columns <= datasheet_get_n_columns (ds));
819 assert (start_column + n_columns <= datasheet_get_n_columns (ds));
821 prow = axis_map (ds->rows, lrow);
822 for (i = 0; i < n_columns; )
824 struct source *source = columns[i].source;
828 if (columns[i].width < 0)
834 for (j = i + 1; j < n_columns; j++)
835 if (columns[j].width < 0 || columns[j].source != source)
839 ok = source_read (&columns[i], prow, &data[i], j - i);
841 ok = source_write (&columns[i], prow, &data[i], j - i);
845 taint_set_taint (ds->taint);
856 An axis has two functions. First, it maintains a mapping from
857 logical (client-visible) to physical (storage) ordinates. The
858 axis_map and axis_get_size functions inspect this mapping, and
859 the axis_insert, axis_remove, and axis_move functions modify
860 it. Second, it tracks the set of ordinates that are unused
861 and available for reuse. The axis_allocate,
862 axis_make_available, and axis_extend functions affect the set
863 of available ordinates. */
866 struct tower log_to_phy; /* Map from logical to physical ordinates;
867 contains "struct axis_group"s. */
868 struct range_set *available; /* Set of unused, available ordinates. */
869 unsigned long int phy_size; /* Current physical length of axis. */
872 /* A mapping from logical to physical ordinates. */
875 struct tower_node logical; /* Range of logical ordinates. */
876 unsigned long phy_start; /* First corresponding physical ordinate. */
879 static struct axis_group *axis_group_from_tower_node (struct tower_node *);
880 static struct tower_node *make_axis_group (unsigned long int phy_start);
881 static struct tower_node *split_axis (struct axis *, unsigned long int where);
882 static void merge_axis_nodes (struct axis *, struct tower_node *,
883 struct tower_node **other_node);
884 static void check_axis_merged (const struct axis *axis UNUSED);
886 /* Creates and returns a new, initially empty axis. */
890 struct axis *axis = xmalloc (sizeof *axis);
891 tower_init (&axis->log_to_phy);
892 axis->available = range_set_create ();
897 /* Returns a clone of existing axis OLD.
899 Currently this is used only by the datasheet model checker
900 driver, but it could be otherwise useful. */
902 axis_clone (const struct axis *old)
904 const struct tower_node *node;
907 new = xmalloc (sizeof *new);
908 tower_init (&new->log_to_phy);
909 new->available = range_set_clone (old->available, NULL);
910 new->phy_size = old->phy_size;
912 for (node = tower_first (&old->log_to_phy); node != NULL;
913 node = tower_next (&old->log_to_phy, node))
915 unsigned long int size = tower_node_get_size (node);
916 struct axis_group *group = tower_data (node, struct axis_group, logical);
917 tower_insert (&new->log_to_phy, size, make_axis_group (group->phy_start),
924 /* Adds the state of AXIS to the MD4 hash context CTX.
926 This is only used by the datasheet model checker driver. It
927 is unlikely to be otherwise useful. */
929 axis_hash (const struct axis *axis, struct md4_ctx *ctx)
931 const struct tower_node *tn;
932 const struct range_set_node *rsn;
934 for (tn = tower_first (&axis->log_to_phy); tn != NULL;
935 tn = tower_next (&axis->log_to_phy, tn))
937 struct axis_group *group = tower_data (tn, struct axis_group, logical);
938 unsigned long int phy_start = group->phy_start;
939 unsigned long int size = tower_node_get_size (tn);
941 md4_process_bytes (&phy_start, sizeof phy_start, ctx);
942 md4_process_bytes (&size, sizeof size, ctx);
945 RANGE_SET_FOR_EACH (rsn, axis->available)
947 unsigned long int start = range_set_node_get_start (rsn);
948 unsigned long int end = range_set_node_get_end (rsn);
950 md4_process_bytes (&start, sizeof start, ctx);
951 md4_process_bytes (&end, sizeof end, ctx);
954 md4_process_bytes (&axis->phy_size, sizeof axis->phy_size, ctx);
959 axis_destroy (struct axis *axis)
964 while (!tower_is_empty (&axis->log_to_phy))
966 struct tower_node *node = tower_first (&axis->log_to_phy);
967 struct axis_group *group = tower_data (node, struct axis_group,
969 tower_delete (&axis->log_to_phy, node);
973 range_set_destroy (axis->available);
977 /* Allocates up to REQUEST contiguous unused and available
978 ordinates from AXIS. If successful, stores the number
979 obtained into *WIDTH and the ordinate of the first into
980 *START, marks the ordinates as now unavailable return true.
981 On failure, which occurs only if AXIS has no unused and
982 available ordinates, returns false without modifying AXIS. */
984 axis_allocate (struct axis *axis, unsigned long int request,
985 unsigned long int *start, unsigned long int *width)
987 return range_set_allocate (axis->available, request, start, width);
990 /* Marks the WIDTH contiguous ordinates in AXIS, starting from
991 START, as unused and available. */
993 axis_make_available (struct axis *axis,
994 unsigned long int start, unsigned long int width)
996 range_set_set1 (axis->available, start, width);
999 /* Extends the total physical length of AXIS by WIDTH and returns
1000 the first ordinate in the new physical region. */
1001 static unsigned long int
1002 axis_extend (struct axis *axis, unsigned long int width)
1004 unsigned long int start = axis->phy_size;
1005 axis->phy_size += width;
1009 /* Returns the physical ordinate in AXIS corresponding to logical
1010 ordinate LOG_POS. LOG_POS must be less than the logical
1012 static unsigned long int
1013 axis_map (const struct axis *axis, unsigned long log_pos)
1015 struct tower_node *node;
1016 struct axis_group *group;
1017 unsigned long int group_start;
1019 node = tower_lookup (&axis->log_to_phy, log_pos, &group_start);
1020 group = tower_data (node, struct axis_group, logical);
1021 return group->phy_start + (log_pos - group_start);
1024 /* Returns the logical length of AXIS. */
1025 static unsigned long
1026 axis_get_size (const struct axis *axis)
1028 return tower_height (&axis->log_to_phy);
1031 /* Inserts the CNT contiguous physical ordinates starting at
1032 PHY_START into AXIS's logical-to-physical mapping, starting at
1033 logical position LOG_START. */
1035 axis_insert (struct axis *axis,
1036 unsigned long int log_start, unsigned long int phy_start,
1037 unsigned long int cnt)
1039 struct tower_node *before = split_axis (axis, log_start);
1040 struct tower_node *new = make_axis_group (phy_start);
1041 tower_insert (&axis->log_to_phy, cnt, new, before);
1042 merge_axis_nodes (axis, new, NULL);
1043 check_axis_merged (axis);
1046 /* Removes CNT ordinates from AXIS's logical-to-physical mapping
1047 starting at logical position START. */
1049 axis_remove (struct axis *axis,
1050 unsigned long int start, unsigned long int cnt)
1054 struct tower_node *last = split_axis (axis, start + cnt);
1055 struct tower_node *cur, *next;
1056 for (cur = split_axis (axis, start); cur != last; cur = next)
1058 next = tower_delete (&axis->log_to_phy, cur);
1059 free (axis_group_from_tower_node (cur));
1061 merge_axis_nodes (axis, last, NULL);
1062 check_axis_merged (axis);
1066 /* Moves the CNT ordinates in AXIS's logical-to-mapping starting
1067 at logical position OLD_START so that they then start at
1068 position NEW_START. */
1070 axis_move (struct axis *axis,
1071 unsigned long int old_start, unsigned long int new_start,
1072 unsigned long int cnt)
1074 if (cnt > 0 && old_start != new_start)
1076 struct tower_node *old_first, *old_last, *new_first;
1077 struct tower_node *merge1, *merge2;
1078 struct tower tmp_array;
1080 /* Move ordinates OLD_START...(OLD_START + CNT) into new,
1081 separate TMP_ARRAY. */
1082 old_first = split_axis (axis, old_start);
1083 old_last = split_axis (axis, old_start + cnt);
1084 tower_init (&tmp_array);
1085 tower_splice (&tmp_array, NULL,
1086 &axis->log_to_phy, old_first, old_last);
1087 merge_axis_nodes (axis, old_last, NULL);
1088 check_axis_merged (axis);
1090 /* Move TMP_ARRAY to position NEW_START. */
1091 new_first = split_axis (axis, new_start);
1092 merge1 = tower_first (&tmp_array);
1093 merge2 = tower_last (&tmp_array);
1094 if (merge2 == merge1)
1096 tower_splice (&axis->log_to_phy, new_first, &tmp_array, old_first, NULL);
1097 merge_axis_nodes (axis, merge1, &merge2);
1098 merge_axis_nodes (axis, merge2, NULL);
1099 check_axis_merged (axis);
1103 /* Returns the axis_group in which NODE is embedded. */
1104 static struct axis_group *
1105 axis_group_from_tower_node (struct tower_node *node)
1107 return tower_data (node, struct axis_group, logical);
1110 /* Creates and returns a new axis_group at physical position
1112 static struct tower_node *
1113 make_axis_group (unsigned long phy_start)
1115 struct axis_group *group = xmalloc (sizeof *group);
1116 group->phy_start = phy_start;
1117 return &group->logical;
1120 /* Returns the tower_node in AXIS's logical-to-physical map whose
1121 bottom edge is at exact level WHERE. If there is no such
1122 tower_node in AXIS's logical-to-physical map, then split_axis
1123 creates one by breaking an existing tower_node into two
1124 separate ones, unless WHERE is equal to the tower height, in
1125 which case it simply returns a null pointer. */
1126 static struct tower_node *
1127 split_axis (struct axis *axis, unsigned long int where)
1129 unsigned long int group_start;
1130 struct tower_node *group_node;
1131 struct axis_group *group;
1133 assert (where <= tower_height (&axis->log_to_phy));
1134 if (where >= tower_height (&axis->log_to_phy))
1137 group_node = tower_lookup (&axis->log_to_phy, where, &group_start);
1138 group = axis_group_from_tower_node (group_node);
1139 if (where > group_start)
1141 unsigned long int size_1 = where - group_start;
1142 unsigned long int size_2 = tower_node_get_size (group_node) - size_1;
1143 struct tower_node *next = tower_next (&axis->log_to_phy, group_node);
1144 struct tower_node *new = make_axis_group (group->phy_start + size_1);
1145 tower_resize (&axis->log_to_phy, group_node, size_1);
1146 tower_insert (&axis->log_to_phy, size_2, new, next);
1150 return &group->logical;
1153 /* Within AXIS, attempts to merge NODE (or the last node in AXIS,
1154 if NODE is null) with its neighbor nodes. This is possible
1155 when logically adjacent nodes are also adjacent physically (in
1158 When a merge occurs, and OTHER_NODE is non-null and points to
1159 the node to be deleted, this function also updates
1160 *OTHER_NODE, if necessary, to ensure that it remains a valid
1163 merge_axis_nodes (struct axis *axis, struct tower_node *node,
1164 struct tower_node **other_node)
1166 struct tower *t = &axis->log_to_phy;
1167 struct axis_group *group;
1168 struct tower_node *next, *prev;
1170 /* Find node to potentially merge with neighbors. */
1172 node = tower_last (t);
1175 group = axis_group_from_tower_node (node);
1177 /* Try to merge NODE with successor. */
1178 next = tower_next (t, node);
1181 struct axis_group *next_group = axis_group_from_tower_node (next);
1182 unsigned long this_height = tower_node_get_size (node);
1184 if (group->phy_start + this_height == next_group->phy_start)
1186 unsigned long next_height = tower_node_get_size (next);
1187 tower_resize (t, node, this_height + next_height);
1188 if (other_node != NULL && *other_node == next)
1189 *other_node = tower_next (t, *other_node);
1190 tower_delete (t, next);
1195 /* Try to merge NODE with predecessor. */
1196 prev = tower_prev (t, node);
1199 struct axis_group *prev_group = axis_group_from_tower_node (prev);
1200 unsigned long prev_height = tower_node_get_size (prev);
1202 if (prev_group->phy_start + prev_height == group->phy_start)
1204 unsigned long this_height = tower_node_get_size (node);
1205 group->phy_start = prev_group->phy_start;
1206 tower_resize (t, node, this_height + prev_height);
1207 if (other_node != NULL && *other_node == prev)
1208 *other_node = tower_next (t, *other_node);
1209 tower_delete (t, prev);
1215 /* Verify that all potentially merge-able nodes in AXIS are
1218 check_axis_merged (const struct axis *axis UNUSED)
1220 #if ASSERT_LEVEL >= 10
1221 struct tower_node *prev, *node;
1223 for (prev = NULL, node = tower_first (&axis->log_to_phy); node != NULL;
1224 prev = node, node = tower_next (&axis->log_to_phy, node))
1227 struct axis_group *prev_group = axis_group_from_tower_node (prev);
1228 unsigned long prev_height = tower_node_get_size (prev);
1229 struct axis_group *node_group = axis_group_from_tower_node (node);
1230 assert (prev_group->phy_start + prev_height != node_group->phy_start);
1237 /* Creates and returns an empty, unbacked source with N_BYTES
1238 bytes per case, none of which are initially in use. */
1239 static struct source *
1240 source_create_empty (size_t n_bytes)
1242 struct source *source = xmalloc (sizeof *source);
1243 size_t row_size = n_bytes + 4 * sizeof (void *);
1244 size_t max_memory_rows = settings_get_workspace () / row_size;
1245 source->avail = range_set_create ();
1246 range_set_set1 (source->avail, 0, n_bytes);
1247 source->data = sparse_xarray_create (n_bytes, MAX (max_memory_rows, 4));
1248 source->backing = NULL;
1249 source->backing_rows = 0;
1254 /* Creates and returns a new source backed by READER and with the
1255 same initial dimensions and content. */
1256 static struct source *
1257 source_create_casereader (struct casereader *reader)
1259 const struct caseproto *proto = casereader_get_proto (reader);
1260 size_t n_bytes = caseproto_to_n_bytes (proto);
1261 struct source *source = source_create_empty (n_bytes);
1265 range_set_set0 (source->avail, 0, n_bytes);
1266 source->backing = reader;
1267 source->backing_rows = casereader_count_cases (reader);
1270 n_columns = caseproto_get_n_widths (proto);
1271 for (i = 0; i < n_columns; i++)
1272 if (caseproto_get_width (proto, i) >= 0)
1278 /* Returns a clone of source OLD with the same data and backing
1281 Currently this is used only by the datasheet model checker
1282 driver, but it could be otherwise useful. */
1283 static struct source *
1284 source_clone (const struct source *old)
1286 struct source *new = xmalloc (sizeof *new);
1287 new->avail = range_set_clone (old->avail, NULL);
1288 new->data = sparse_xarray_clone (old->data);
1289 new->backing = old->backing != NULL ? casereader_clone (old->backing) : NULL;
1290 new->backing_rows = old->backing_rows;
1291 new->n_used = old->n_used;
1292 if (new->data == NULL)
1294 source_destroy (new);
1301 source_allocate_column (struct source *source, int width)
1303 unsigned long int start;
1306 assert (width >= 0);
1307 n_bytes = width_to_n_bytes (width);
1308 if (source->backing == NULL
1309 && range_set_allocate_fully (source->avail, n_bytes, &start))
1316 source_release_column (struct source *source, int ofs, int width)
1318 assert (width >= 0);
1319 range_set_set1 (source->avail, ofs, width_to_n_bytes (width));
1320 if (source->backing != NULL)
1324 /* Returns true if SOURCE has any columns in use,
1327 source_in_use (const struct source *source)
1329 return source->n_used > 0;
1332 /* Destroys SOURCE and its data and backing, if any. */
1334 source_destroy (struct source *source)
1338 range_set_destroy (source->avail);
1339 sparse_xarray_destroy (source->data);
1340 casereader_destroy (source->backing);
1345 /* Returns the number of rows in SOURCE's backing casereader
1346 (SOURCE must have a backing casereader). */
1348 source_get_backing_n_rows (const struct source *source)
1350 assert (source_has_backing (source));
1351 return source->backing_rows;
1354 /* Reads the N COLUMNS in the given ROW, into the N VALUES. Returns true if
1355 successful, false on I/O error.
1357 All of the COLUMNS must have the same source.
1359 The caller must have initialized VALUES with the proper width. */
1361 source_read (const struct column columns[], casenumber row,
1362 union value values[], size_t n)
1364 struct source *source = columns[0].source;
1367 if (source->backing == NULL
1368 || sparse_xarray_contains_row (source->data, row))
1372 for (i = 0; i < n && ok; i++)
1373 ok = sparse_xarray_read (source->data, row, columns[i].byte_ofs,
1374 width_to_n_bytes (columns[i].width),
1375 value_to_data (&values[i], columns[i].width));
1380 struct ccase *c = casereader_peek (source->backing, row);
1381 bool ok = c != NULL;
1384 for (i = 0; i < n; i++)
1385 value_copy (&values[i], case_data_idx (c, columns[i].value_ofs),
1394 copy_case_into_source (struct source *source, struct ccase *c, casenumber row)
1396 const struct caseproto *proto = casereader_get_proto (source->backing);
1397 size_t n_widths = caseproto_get_n_widths (proto);
1402 for (i = 0; i < n_widths; i++)
1404 int width = caseproto_get_width (proto, i);
1407 int n_bytes = width_to_n_bytes (width);
1408 if (!sparse_xarray_write (source->data, row, ofs, n_bytes,
1409 value_to_data (case_data_idx (c, i),
1418 /* Writes the N VALUES to their source in the given ROW and COLUMNS. Returns
1419 true if successful, false on I/O error. On error, the row's data may be
1420 completely or partially corrupted, both inside and outside the region to be
1423 All of the COLUMNS must have the same source. */
1425 source_write (const struct column columns[], casenumber row,
1426 const union value values[], size_t n)
1428 struct source *source = columns[0].source;
1429 struct casereader *backing = source->backing;
1433 && !sparse_xarray_contains_row (source->data, row)
1434 && row < source->backing_rows)
1439 c = casereader_peek (backing, row);
1443 ok = copy_case_into_source (source, c, row);
1449 for (i = 0; i < n; i++)
1450 if (!sparse_xarray_write (source->data, row, columns[i].byte_ofs,
1451 width_to_n_bytes (columns[i].width),
1452 value_to_data (&values[i], columns[i].width)))
1457 /* Within SOURCE, which must not have a backing casereader,
1458 writes the VALUE_CNT values in VALUES_CNT to the VALUE_CNT
1459 columns starting from START_COLUMN, in every row, even in rows
1460 not yet otherwise initialized. Returns true if successful,
1461 false if an I/O error occurs.
1463 We don't support backing != NULL because (1) it's harder and
1464 (2) this function is only called by
1465 datasheet_insert_column, which doesn't reuse columns from
1466 sources that are backed by casereaders. */
1468 source_write_column (struct column *column, const union value *value)
1470 int width = column->width;
1472 assert (column->source->backing == NULL);
1473 assert (width >= 0);
1475 return sparse_xarray_write_columns (column->source->data, column->byte_ofs,
1476 width_to_n_bytes (width),
1477 value_to_data (value, width));
1480 /* Returns true if SOURCE has a backing casereader, false
1483 source_has_backing (const struct source *source)
1485 return source->backing != NULL;
1488 /* Datasheet model checker test driver. */
1491 get_source_index (const struct datasheet *ds, const struct source *source)
1495 for (i = 0; i < ds->n_sources; i++)
1496 if (ds->sources[i] == source)
1501 /* Clones the structure and contents of ODS into a new datasheet,
1502 and returns the new datasheet. */
1504 clone_datasheet (const struct datasheet *ods)
1506 struct datasheet *ds;
1509 ds = xmalloc (sizeof *ds);
1511 ds->sources = xmalloc (ods->n_sources * sizeof *ds->sources);
1512 for (i = 0; i < ods->n_sources; i++)
1513 ds->sources[i] = source_clone (ods->sources[i]);
1514 ds->n_sources = ods->n_sources;
1516 ds->proto = ods->proto != NULL ? caseproto_ref (ods->proto) : NULL;
1517 ds->columns = xmemdup (ods->columns, ods->n_columns * sizeof *ods->columns);
1518 for (i = 0; i < ods->n_columns; i++)
1519 ds->columns[i].source
1520 = ds->sources[get_source_index (ods, ods->columns[i].source)];
1521 ds->n_columns = ods->n_columns;
1522 ds->column_min_alloc = ods->column_min_alloc;
1524 ds->rows = axis_clone (ods->rows);
1526 ds->taint = taint_create ();
1531 /* Hashes the structure of datasheet DS and returns the hash.
1532 We use MD4 because it is much faster than MD5 or SHA-1 but its
1533 collision resistance is just as good. */
1535 hash_datasheet (const struct datasheet *ds)
1537 unsigned int hash[DIV_RND_UP (20, sizeof (unsigned int))];
1541 md4_init_ctx (&ctx);
1542 for (i = 0; i < ds->n_columns; i++)
1544 const struct column *column = &ds->columns[i];
1545 int source_n_bytes = sparse_xarray_get_n_columns (column->source->data);
1546 md4_process_bytes (&source_n_bytes, sizeof source_n_bytes, &ctx);
1547 /*md4_process_bytes (&column->byte_ofs, sizeof column->byte_ofs, &ctx);*/
1548 md4_process_bytes (&column->value_ofs, sizeof column->value_ofs, &ctx);
1549 md4_process_bytes (&column->width, sizeof column->width, &ctx);
1551 axis_hash (ds->rows, &ctx);
1552 md4_process_bytes (&ds->column_min_alloc, sizeof ds->column_min_alloc, &ctx);
1553 md4_finish_ctx (&ctx, hash);