--- /dev/null
+/* PSPP - a program for statistical analysis.
+ Copyright (C) 2011 Free Software Foundation, Inc.
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>. */
+
+#include <config.h>
+
+#include "mcnemar.h"
+
+#include <gsl/gsl_cdf.h>
+#include <gsl/gsl_randist.h>
+
+#include "data/casereader.h"
+#include "data/dataset.h"
+#include "data/dictionary.h"
+#include "data/format.h"
+#include "data/missing-values.h"
+#include "data/variable.h"
+#include "language/stats/npar.h"
+#include "libpspp/str.h"
+#include "output/tab.h"
+#include "libpspp/message.h"
+
+#include "gl/minmax.h"
+#include "gl/xalloc.h"
+
+#include "data/value.h"
+
+#include "gettext.h"
+#define _(msgid) gettext (msgid)
+
+
+struct mcnemar
+{
+ union value val0;
+ union value val1;
+
+ double n00;
+ double n01;
+ double n10;
+ double n11;
+};
+
+static void
+output_freq_table (variable_pair *vp,
+ const struct mcnemar *param,
+ const struct dictionary *dict);
+
+
+static void
+output_statistics_table (const struct two_sample_test *t2s,
+ const struct mcnemar *param,
+ const struct dictionary *dict);
+
+
+void
+mcnemar_execute (const struct dataset *ds,
+ struct casereader *input,
+ enum mv_class exclude,
+ const struct npar_test *test,
+ bool exact UNUSED,
+ double timer UNUSED)
+{
+ int i;
+ bool warn = true;
+
+ const struct dictionary *dict = dataset_dict (ds);
+
+ const struct two_sample_test *t2s = UP_CAST (test, const struct two_sample_test, parent);
+ struct ccase *c;
+
+ struct casereader *r = input;
+
+ struct mcnemar *mc = xcalloc (sizeof *mc, t2s->n_pairs);
+
+ for (i = 0 ; i < t2s->n_pairs; ++i )
+ {
+ mc[i].val0.f = mc[i].val1.f = SYSMIS;
+ }
+
+ for (; (c = casereader_read (r)) != NULL; case_unref (c))
+ {
+ const double weight = dict_get_case_weight (dict, c, &warn);
+
+ for (i = 0 ; i < t2s->n_pairs; ++i )
+ {
+ variable_pair *vp = &t2s->pairs[i];
+ const union value *value0 = case_data (c, (*vp)[0]);
+ const union value *value1 = case_data (c, (*vp)[1]);
+
+ if (var_is_value_missing ((*vp)[0], value0, exclude))
+ continue;
+
+ if (var_is_value_missing ((*vp)[1], value1, exclude))
+ continue;
+
+
+ if ( mc[i].val0.f == SYSMIS)
+ {
+ if (mc[i].val1.f != value0->f)
+ mc[i].val0.f = value0->f;
+ else if (mc[i].val1.f != value1->f)
+ mc[i].val0.f = value1->f;
+ }
+
+ if ( mc[i].val1.f == SYSMIS)
+ {
+ if (mc[i].val0.f != value1->f)
+ mc[i].val1.f = value1->f;
+ else if (mc[i].val0.f != value0->f)
+ mc[i].val1.f = value0->f;
+ }
+
+ if (mc[i].val0.f == value0->f && mc[i].val0.f == value1->f)
+ {
+ mc[i].n00 += weight;
+ }
+ else if ( mc[i].val0.f == value0->f && mc[i].val1.f == value1->f)
+ {
+ mc[i].n10 += weight;
+ }
+ else if ( mc[i].val1.f == value0->f && mc[i].val0.f == value1->f)
+ {
+ mc[i].n01 += weight;
+ }
+ else if ( mc[i].val1.f == value0->f && mc[i].val1.f == value1->f)
+ {
+ mc[i].n11 += weight;
+ }
+ else
+ {
+ msg (ME, _("The McNemar test is appropriate only for dichotomous variables"));
+ }
+ }
+ }
+
+ casereader_destroy (r);
+
+ for (i = 0 ; i < t2s->n_pairs ; ++i)
+ output_freq_table (&t2s->pairs[i], mc + i, dict);
+
+ output_statistics_table (t2s, mc, dict);
+
+ free (mc);
+}
+
+
+static void
+output_freq_table (variable_pair *vp,
+ const struct mcnemar *param,
+ const struct dictionary *dict)
+{
+ const int header_rows = 2;
+ const int header_cols = 1;
+
+ struct tab_table *table = tab_create (header_cols + 2, header_rows + 2);
+
+ const struct variable *wv = dict_get_weight (dict);
+ const struct fmt_spec *wfmt = wv ? var_get_print_format (wv) : & F_8_0;
+
+
+ struct string pair_name;
+ struct string val1str ;
+ struct string val0str ;
+
+ ds_init_empty (&val0str);
+ ds_init_empty (&val1str);
+
+ var_append_value_name ((*vp)[0], ¶m->val0, &val0str);
+ var_append_value_name ((*vp)[1], ¶m->val1, &val1str);
+
+ ds_init_cstr (&pair_name, var_to_string ((*vp)[0]));
+ ds_put_cstr (&pair_name, " & ");
+ ds_put_cstr (&pair_name, var_to_string ((*vp)[1]));
+
+ tab_title (table, ds_cstr (&pair_name));
+
+ ds_destroy (&pair_name);
+
+ tab_headers (table, header_cols, 0, header_rows, 0);
+
+ /* Vertical lines inside the box */
+ tab_box (table, 0, 0, -1, TAL_1,
+ 1, 0, tab_nc (table) - 1, tab_nr (table) - 1 );
+
+ /* Box around entire table */
+ tab_box (table, TAL_2, TAL_2, -1, -1,
+ 0, 0, tab_nc (table) - 1, tab_nr (table) - 1 );
+
+ tab_vline (table, TAL_2, header_cols, 0, tab_nr (table) - 1);
+ tab_hline (table, TAL_2, 0, tab_nc (table) - 1, header_rows);
+
+ tab_text (table, 0, 0, TAB_CENTER, var_to_string ((*vp)[0]));
+
+ tab_joint_text (table, 1, 0, 2, 0, TAB_CENTER, var_to_string ((*vp)[1]));
+ tab_hline (table, TAL_1, 1, tab_nc (table) - 1, 1);
+
+
+ tab_text (table, 0, header_rows + 0, TAB_LEFT, ds_cstr (&val0str));
+ tab_text (table, 0, header_rows + 1, TAB_LEFT, ds_cstr (&val1str));
+
+ tab_text (table, header_cols + 0, 1, TAB_LEFT, ds_cstr (&val0str));
+ tab_text (table, header_cols + 1, 1, TAB_LEFT, ds_cstr (&val1str));
+
+ tab_double (table, header_cols + 0, header_rows + 0, TAB_RIGHT, param->n00, wfmt);
+ tab_double (table, header_cols + 0, header_rows + 1, TAB_RIGHT, param->n01, wfmt);
+ tab_double (table, header_cols + 1, header_rows + 0, TAB_RIGHT, param->n10, wfmt);
+ tab_double (table, header_cols + 1, header_rows + 1, TAB_RIGHT, param->n11, wfmt);
+
+ tab_submit (table);
+
+ ds_destroy (&val0str);
+ ds_destroy (&val1str);
+}
+
+
+static void
+output_statistics_table (const struct two_sample_test *t2s,
+ const struct mcnemar *mc,
+ const struct dictionary *dict)
+{
+ int i;
+
+ struct tab_table *table = tab_create (5, t2s->n_pairs + 1);
+
+ const struct variable *wv = dict_get_weight (dict);
+ const struct fmt_spec *wfmt = wv ? var_get_print_format (wv) : & F_8_0;
+
+ tab_title (table, _("Test Statistics"));
+
+ tab_headers (table, 0, 1, 0, 1);
+
+ tab_hline (table, TAL_2, 0, tab_nc (table) - 1, 1);
+ tab_vline (table, TAL_2, 1, 0, tab_nr (table) - 1);
+
+
+ /* Vertical lines inside the box */
+ tab_box (table, -1, -1, -1, TAL_1,
+ 0, 0,
+ tab_nc (table) - 1, tab_nr (table) - 1);
+
+ /* Box around entire table */
+ tab_box (table, TAL_2, TAL_2, -1, -1,
+ 0, 0, tab_nc (table) - 1,
+ tab_nr (table) - 1);
+
+ tab_text (table, 1, 0, TAT_TITLE | TAB_CENTER,
+ _("N"));
+
+ tab_text (table, 2, 0, TAT_TITLE | TAB_CENTER,
+ _("Exact Sig. (2-tailed)"));
+
+ tab_text (table, 3, 0, TAT_TITLE | TAB_CENTER,
+ _("Exact Sig. (1-tailed)"));
+
+ tab_text (table, 4, 0, TAT_TITLE | TAB_CENTER,
+ _("Point Probability"));
+
+ for (i = 0 ; i < t2s->n_pairs; ++i)
+ {
+ double sig;
+ variable_pair *vp = &t2s->pairs[i];
+
+ struct string pair_name;
+ ds_init_cstr (&pair_name, var_to_string ((*vp)[0]));
+ ds_put_cstr (&pair_name, " & ");
+ ds_put_cstr (&pair_name, var_to_string ((*vp)[1]));
+
+ tab_text (table, 0, 1 + i, TAB_LEFT, ds_cstr (&pair_name));
+ ds_destroy (&pair_name);
+
+ tab_double (table, 1, 1 + i, TAB_RIGHT, mc[i].n00 + mc[i].n01 + mc[i].n10 + mc[i].n11, wfmt);
+
+ sig = gsl_cdf_binomial_P (mc[i].n01, 0.5, mc[i].n01 + mc[i].n10);
+
+ tab_double (table, 2, 1 + i, TAB_RIGHT, 2 * sig, NULL);
+ tab_double (table, 3, 1 + i, TAB_RIGHT, sig, NULL);
+
+ tab_double (table, 4, 1 + i, TAB_RIGHT, gsl_ran_binomial_pdf (mc[i].n01, 0.5, mc[i].n01 + mc[i].n10),
+ NULL);
+ }
+
+ tab_submit (table);
+}
#include "language/stats/friedman.h"
#include "language/stats/kruskal-wallis.h"
#include "language/stats/mann-whitney.h"
+#include "language/stats/mcnemar.h"
#include "language/stats/npar-summary.h"
#include "language/stats/runs.h"
#include "language/stats/sign.h"
int kendall;
int kruskal_wallis;
int mann_whitney;
+ int mcnemar;
int missing;
int method;
int statistics;
static int npar_sign (struct lexer *, struct dataset *, struct npar_specs *);
static int npar_kruskal_wallis (struct lexer *, struct dataset *, struct npar_specs *);
static int npar_mann_whitney (struct lexer *, struct dataset *, struct npar_specs *);
+static int npar_mcnemar (struct lexer *, struct dataset *, struct npar_specs *);
static int npar_method (struct lexer *, struct npar_specs *);
/* Command parsing functions. */
npt->friedman = 0;
npt->kruskal_wallis = 0;
npt->mann_whitney = 0;
+ npt->mcnemar = 0;
npt->runs = 0;
npt->sign = 0;
npt->wilcoxon = 0;
NOT_REACHED ();
}
}
+ else if (lex_match_phrase (lexer, "MCNEMAR"))
+ {
+ lex_match (lexer, T_EQUALS);
+ npt->mcnemar++;
+ switch (npar_mcnemar (lexer, ds, nps))
+ {
+ case 0:
+ goto lossage;
+ case 1:
+ break;
+ case 2:
+ lex_error (lexer, NULL);
+ goto lossage;
+ default:
+ NOT_REACHED ();
+ }
+ }
else if (lex_match_phrase (lexer, "M-W") ||
lex_match_phrase (lexer, "MANN-WHITNEY"))
{
struct dataset *ds,
struct npar_specs *specs )
{
-
-
struct two_sample_test *tp = pool_alloc (specs->pool, sizeof (*tp));
struct npar_test *nt = &tp->parent;
nt->execute = wilcoxon_execute;
}
+
+
static int
npar_sign (struct lexer *lexer, struct dataset *ds,
struct npar_specs *specs)
return 1;
}
+
+static int
+npar_mcnemar (struct lexer *lexer, struct dataset *ds,
+ struct npar_specs *specs)
+{
+ struct two_sample_test *tp = pool_alloc (specs->pool, sizeof (*tp));
+ struct npar_test *nt = &tp->parent;
+
+ nt->execute = mcnemar_execute;
+
+ if (!parse_two_sample_related_test (lexer, dataset_dict (ds),
+ tp, specs->pool) )
+ return 0;
+
+ specs->n_tests++;
+ specs->test = pool_realloc (specs->pool,
+ specs->test,
+ sizeof (*specs->test) * specs->n_tests);
+ specs->test[specs->n_tests - 1] = nt;
+
+ return 1;
+}
+
+
static int
npar_kruskal_wallis (struct lexer *lexer, struct dataset *ds,
struct npar_specs *specs)
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