Rename procedure.[ch] to dataset.[ch].

[pspp-builds.git] / src / language / stats / correlations.c

diff --git a/src/language/stats/correlations.c b/src/language/stats/correlations.c
index c575205ccf2e8b8858e06383854e13f340baaf98..bc6508bd2f1863be967eec13fb3aed6a1c81a308 100644 (file)
--- a/src/language/stats/correlations.c
+++ b/src/language/stats/correlations.c
@@ -1,5 +1,5 @@
 /* PSPP - a program for statistical analysis.
-   Copyright (C) 2009 Free Software Foundation, Inc.
+   Copyright (C) 2009, 2010, 2011 Free Software Foundation, Inc.
 
    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
@@ -16,31 +16,30 @@
 
 #include <config.h>
 
-#include <libpspp/assertion.h>
-#include <math/covariance.h>
-#include <math/correlation.h>
-#include <math/design-matrix.h>
+#include <gsl/gsl_cdf.h>
 #include <gsl/gsl_matrix.h>
-#include <data/casegrouper.h>
-#include <data/casereader.h>
-#include <data/dictionary.h>
-#include <data/procedure.h>
-#include <data/variable.h>
-#include <language/command.h>
-#include <language/dictionary/split-file.h>
-#include <language/lexer/lexer.h>
-#include <language/lexer/variable-parser.h>
-#include <output/manager.h>
-#include <output/table.h>
-#include <libpspp/message.h>
-#include <data/format.h>
-#include <math/moments.h>
-
 #include <math.h>
-#include "xalloc.h"
-#include "minmax.h"
-#include <libpspp/misc.h>
-#include <gsl/gsl_cdf.h>
+
+#include "data/casegrouper.h"
+#include "data/casereader.h"
+#include "data/dataset.h"
+#include "data/dictionary.h"
+#include "data/format.h"
+#include "data/variable.h"
+#include "language/command.h"
+#include "language/dictionary/split-file.h"
+#include "language/lexer/lexer.h"
+#include "language/lexer/variable-parser.h"
+#include "libpspp/assertion.h"
+#include "libpspp/message.h"
+#include "libpspp/misc.h"
+#include "math/correlation.h"
+#include "math/covariance.h"
+#include "math/moments.h"
+#include "output/tab.h"
+
+#include "gl/xalloc.h"
+#include "gl/minmax.h"
 
 #include "gettext.h"
 #define _(msgid) gettext (msgid)
@@ -96,7 +95,6 @@ output_descriptives (const struct corr *corr, const gsl_matrix *means,
 
   struct tab_table *t = tab_create (nc, nr);
   tab_title (t, _("Descriptive Statistics"));
-  tab_dim (t, tab_natural_dimensions, NULL, NULL);
 
   tab_headers (t, heading_columns, 0, heading_rows, 0);
 
@@ -191,7 +189,6 @@ output_correlation (const struct corr *corr, const struct corr_opts *opts,
 
   t = tab_create (nc, nr);
   tab_title (t, _("Correlations"));
-  tab_dim (t, tab_natural_dimensions, NULL, NULL);
 
   tab_headers (t, heading_columns, 0, heading_rows, 0);
 
@@ -282,18 +279,27 @@ run_corr (struct casereader *r, const struct corr_opts *opts, const struct corr
 {
   struct ccase *c;
   const gsl_matrix *var_matrix,  *samples_matrix, *mean_matrix;
-  const gsl_matrix *cov_matrix;
+  gsl_matrix *cov_matrix;
   gsl_matrix *corr_matrix;
-  struct covariance *cov = covariance_create (corr->n_vars_total, corr->vars,
-                                             opts->wv, opts->exclude);
+  struct covariance *cov = covariance_2pass_create (corr->n_vars_total, corr->vars,
+                                                   NULL,
+                                                   opts->wv, opts->exclude);
 
+  struct casereader *rc = casereader_clone (r);
   for ( ; (c = casereader_read (r) ); case_unref (c))
     {
-      covariance_accumulate (cov, c);
+      covariance_accumulate_pass1 (cov, c);
+    }
+
+  for ( ; (c = casereader_read (rc) ); case_unref (c))
+    {
+      covariance_accumulate_pass2 (cov, c);
     }
 
   cov_matrix = covariance_calculate (cov);
 
+  casereader_destroy (rc);
+
   samples_matrix = covariance_moments (cov, MOMENT_NONE);
   var_matrix = covariance_moments (cov, MOMENT_VARIANCE);
   mean_matrix = covariance_moments (cov, MOMENT_MEAN);
@@ -310,6 +316,7 @@ run_corr (struct casereader *r, const struct corr_opts *opts, const struct corr
 
   covariance_destroy (cov);
   gsl_matrix_free (corr_matrix);
+  gsl_matrix_free (cov_matrix);
 }
 
 int
@@ -336,13 +343,13 @@ cmd_correlation (struct lexer *lexer, struct dataset *ds)
   opts.statistics = 0;
 
   /* Parse CORRELATIONS. */
-  while (lex_token (lexer) != '.')
+  while (lex_token (lexer) != T_ENDCMD)
     {
-      lex_match (lexer, '/');
+      lex_match (lexer, T_SLASH);
       if (lex_match_id (lexer, "MISSING"))
         {
-          lex_match (lexer, '=');
-          while (lex_token (lexer) != '.' && lex_token (lexer) != '/')
+          lex_match (lexer, T_EQUALS);
+          while (lex_token (lexer) != T_ENDCMD && lex_token (lexer) != T_SLASH)
             {
               if (lex_match_id (lexer, "PAIRWISE"))
                 opts.missing_type = CORR_PAIRWISE;
@@ -358,13 +365,13 @@ cmd_correlation (struct lexer *lexer, struct dataset *ds)
                   lex_error (lexer, NULL);
                   goto error;
                 }
-              lex_match (lexer, ',');
+              lex_match (lexer, T_COMMA);
             }
         }
       else if (lex_match_id (lexer, "PRINT"))
        {
-          lex_match (lexer, '=');
-          while (lex_token (lexer) != '.' && lex_token (lexer) != '/')
+          lex_match (lexer, T_EQUALS);
+          while (lex_token (lexer) != T_ENDCMD && lex_token (lexer) != T_SLASH)
            {
              if ( lex_match_id (lexer, "TWOTAIL"))
                opts.tails = 2;
@@ -380,13 +387,13 @@ cmd_correlation (struct lexer *lexer, struct dataset *ds)
                  goto error;
                }
 
-              lex_match (lexer, ',');
+              lex_match (lexer, T_COMMA);
            }
        }
       else if (lex_match_id (lexer, "STATISTICS"))
        {
-         lex_match (lexer, '=');
-          while (lex_token (lexer) != '.' && lex_token (lexer) != '/')
+         lex_match (lexer, T_EQUALS);
+          while (lex_token (lexer) != T_ENDCMD && lex_token (lexer) != T_SLASH)
            {
              if ( lex_match_id (lexer, "DESCRIPTIVES"))
                opts.statistics = STATS_DESCRIPTIVES;
@@ -403,14 +410,14 @@ cmd_correlation (struct lexer *lexer, struct dataset *ds)
                  goto error;
                }
 
-              lex_match (lexer, ',');
+              lex_match (lexer, T_COMMA);
            }
        }
       else
        {
          if (lex_match_id (lexer, "VARIABLES"))
            {
-             lex_match (lexer, '=');
+             lex_match (lexer, T_EQUALS);
            }
 
          corr = xrealloc (corr, sizeof (*corr) * (n_corrs + 1));
@@ -493,10 +500,13 @@ cmd_correlation (struct lexer *lexer, struct dataset *ds)
 
 
   /* Done. */
+  free (corr->vars);
   free (corr);
+
   return ok ? CMD_SUCCESS : CMD_CASCADING_FAILURE;
 
  error:
+  free (corr->vars);
   free (corr);
   return CMD_FAILURE;
 }